PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Trihelix | ||||||||
Protein Properties | Length: 420aa MW: 47206.8 Da PI: 9.3922 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.8 | 3.4e-19 | 19 | 109 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +Wt++e laLiea+re++ +lrrg l+ ++W++v++++ +++ qC++k+e+l++ry+++k+++ + + s++ yfd+++a DCAR_008328 19 CWTQEEALALIEAYRERWYALRRGYLRTADWDSVADAVgqrcPGASPAKTSAQCRHKMEKLRQRYRAEKQRSHSYPGRFFSSWFYFDSMDA 109 8*************************************87443344478999**********************9999999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-19 | 18 | 110 | No hit | No description |
PROSITE profile | PS50090 | 6.841 | 20 | 80 | IPR017877 | Myb-like domain |
SMART | SM00595 | 5.1E-14 | 27 | 115 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTTIEAAPAK IPRKFPPPCW TQEEALALIE AYRERWYALR RGYLRTADWD SVADAVGQRC 60 PGASPAKTSA QCRHKMEKLR QRYRAEKQRS HSYPGRFFSS WFYFDSMDAM ENGTSPGDGS 120 NQVTVVEHNS VPLGFNLKNT SKKIANDFPS PNVDHEGVLF RGGFRVKGVN DRNTVPLGFR 180 LKNSDKIDAK LNPNVGYRVP SGYPFYLNGG SDEENENNGS QFEGGSSDYR AEKFGNGGIR 240 IKTPSDQMMP PSFRARKVGK FEGKVDREYE CDDGGGYDGV GEDGDGEYWV KVPHDRNSAP 300 VGTRQKFSNK NDRNSSPSVD PRFMNGFPSQ ARSDYDRKSG SNGVKRGRNP IEDMVSSIKS 360 LGEGFVKMEK MKMEMAKEIE KTRMDMEMKR NELWIESQQQ IVDALVKGLF EKKVKSPDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236285.1 | 0.0 | PREDICTED: uncharacterized protein LOC108209730 | ||||
TrEMBL | A0A166F911 | 0.0 | A0A166F911_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 2e-38 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008328 |