PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008328

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 420aa MW: 47206.8 Da PI: 9.3922

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008328	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.8	3.4e-19	19	109	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +Wt++e laLiea+re++ +lrrg l+ ++W++v++++ +++ qC++k+e+l++ry+++k+++ + + s++ yfd+++a DCAR_008328 19 CWTQEEALALIEAYRERWYALRRGYLRTADWDSVADAVgqrcPGASPAKTSAQCRHKMEKLRQRYRAEKQRSHSYPGRFFSSWFYFDSMDA 109 8***********************************87443344478999******************9999999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-19	18	110	No hit	No description
PROSITE profile	PS50090	6.841	20	80	IPR017877	Myb-like domain
SMART	SM00595	5.1E-14	27	115	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MTTIEAAPAK IPRKFPPPCW TQEEALALIE AYRERWYALR RGYLRTADWD SVADAVGQRC 60 PGASPAKTSA QCRHKMEKLR QRYRAEKQRS HSYPGRFFSS WFYFDSMDAM ENGTSPGDGS 120 NQVTVVEHNS VPLGFNLKNT SKKIANDFPS PNVDHEGVLF RGGFRVKGVN DRNTVPLGFR 180 LKNSDKIDAK LNPNVGYRVP SGYPFYLNGG SDEENENNGS QFEGGSSDYR AEKFGNGGIR 240 IKTPSDQMMP PSFRARKVGK FEGKVDREYE CDDGGGYDGV GEDGDGEYWV KVPHDRNSAP 300 VGTRQKFSNK NDRNSSPSVD PRFMNGFPSQ ARSDYDRKSG SNGVKRGRNP IEDMVSSIKS 360 LGEGFVKMEK MKMEMAKEIE KTRMDMEMKR NELWIESQQQ IVDALVKGLF EKKVKSPDS*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MTTIEAAPAK IPRKFPPPCW TQEEALALIE AYRERWYALR RGYLRTADWD SVADAVGQRC  60
PGASPAKTSA QCRHKMEKLR QRYRAEKQRS HSYPGRFFSS WFYFDSMDAM ENGTSPGDGS  120
NQVTVVEHNS VPLGFNLKNT SKKIANDFPS PNVDHEGVLF RGGFRVKGVN DRNTVPLGFR  180
LKNSDKIDAK LNPNVGYRVP SGYPFYLNGG SDEENENNGS QFEGGSSDYR AEKFGNGGIR  240
IKTPSDQMMP PSFRARKVGK FEGKVDREYE CDDGGGYDGV GEDGDGEYWV KVPHDRNSAP  300
VGTRQKFSNK NDRNSSPSVD PRFMNGFPSQ ARSDYDRKSG SNGVKRGRNP IEDMVSSIKS  360
LGEGFVKMEK MKMEMAKEIE KTRMDMEMKR NELWIESQQQ IVDALVKGLF EKKVKSPDS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017236285.1	0.0	PREDICTED: uncharacterized protein LOC108209730
TrEMBL	A0A166F911	0.0	A0A166F911_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-38	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_008328