PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008254
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 321aa    MW: 35432.1 Da    PI: 6.5092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008254genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-12110161155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h  +Er+RR+++N+ ++ Lr l+P++   + ++ + a+i+  A++++k+L+
  DCAR_008254 110 QRMTHITVERNRRKQMNEHLSVLRCLMPES---YVQRGDQASIVGGAIDFVKELE 161
                  79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.42E-12108165No hitNo description
SuperFamilySSF474598.11E-15108171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12108164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.399109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-7115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAMETLSSSE LLDFIIYDTF SATPYTCNAT LDTCSFQLQE NHAQKFQHEE YIALAAAAAG  60
NSLNNTSSSS MTLSVKPEST EEQRSLGVQG RKKRRRRPKV CKNKEEAETQ RMTHITVERN  120
RRKQMNEHLS VLRCLMPESY VQRGDQASIV GGAIDFVKEL EHVLQSLEAK KILQSQAAGE  180
KDPAEPTPFA QFFAFPQFTC SQTPNKHYTC STTSGAIADI EVTLVETHAS IRVLSRRRLR  240
QLSRLIGGFQ ALYLTILHLN VTSLEPMVLY SISTKVEEGC HLKSSDDIAG AVHQMLIIIE  300
GEEGEAIGSV AYAADLPSGS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RKKRRRR
29196KKRRRR
3110121RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236217.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T43e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A166F7380.0A0A166F738_DAUCS; Uncharacterized protein
STRINGXP_009763212.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]