PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 321aa MW: 35432.1 Da PI: 6.5092 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.9e-12 | 110 | 161 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr l+P++ + ++ + a+i+ A++++k+L+ DCAR_008254 110 QRMTHITVERNRRKQMNEHLSVLRCLMPES---YVQRGDQASIVGGAIDFVKELE 161 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.42E-12 | 108 | 165 | No hit | No description |
SuperFamily | SSF47459 | 8.11E-15 | 108 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-12 | 108 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.399 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-10 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-7 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MAMETLSSSE LLDFIIYDTF SATPYTCNAT LDTCSFQLQE NHAQKFQHEE YIALAAAAAG 60 NSLNNTSSSS MTLSVKPEST EEQRSLGVQG RKKRRRRPKV CKNKEEAETQ RMTHITVERN 120 RRKQMNEHLS VLRCLMPESY VQRGDQASIV GGAIDFVKEL EHVLQSLEAK KILQSQAAGE 180 KDPAEPTPFA QFFAFPQFTC SQTPNKHYTC STTSGAIADI EVTLVETHAS IRVLSRRRLR 240 QLSRLIGGFQ ALYLTILHLN VTSLEPMVLY SISTKVEEGC HLKSSDDIAG AVHQMLIIIE 300 GEEGEAIGSV AYAADLPSGS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 96 | RKKRRRR |
2 | 91 | 96 | KKRRRR |
3 | 110 | 121 | RMTHITVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236217.1 | 0.0 | PREDICTED: transcription factor bHLH71-like | ||||
Swissprot | Q9C7T4 | 3e-68 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A166F738 | 0.0 | A0A166F738_DAUCS; Uncharacterized protein | ||||
STRING | XP_009763212.1 | 1e-115 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008254 |
Publications ? help Back to Top | |||
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