PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007817
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 309aa    MW: 34696.4 Da    PI: 4.8015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007817genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.3e-07195237855
                  HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + r RR++i ++ +eL +l+P         K++ ae+ + A +YIk Lq
  DCAR_007817 195 AARIRRRKITEKTQELGKLIPGgH------KMNTAEMFQAAFKYIKLLQ 237
                  5699*****************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11190249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-9191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-8193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-8194240No hitNo description
PfamPF000101.1E-4196237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALSYYSNYG SAQVLDHLNQ DQTTSAIPHH NSSSIFLPQE EVSQDLFLPP ELLNFHDNFD  60
TCIDTLFSQN SLFYYPDDNV DAYTAISPAP VPLNALPPPP SQQIVEVEEP YFDDYSKRVK  120
IPENYLFYPE MTIQSNYNNN YEIGFVPNPP LLPEFILTDL PLPVPPVFNE GSHDNHVKKA  180
ASGGSGGSLS QQSVAARIRR RKITEKTQEL GKLIPGGHKM NTAEMFQAAF KYIKLLQAQV  240
GILQLMQEEN EEGMYSPELE ALVTSPLVQE KLYSAEKCLV PTNFVKSLIR KPQLQSNPQL  300
IKHLIKLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232386.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A166EU130.0A0A166EU13_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-26bHLH family protein