PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_007644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 568aa MW: 63249.6 Da PI: 6.8325 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5.2e-12 | 249 | 305 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aaka++ a++k++g DCAR_007644 249 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 305 78*******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 348 | 399 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g DCAR_007644 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-9 | 249 | 305 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-14 | 249 | 315 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.55E-18 | 249 | 315 | No hit | No description |
PROSITE profile | PS51032 | 17.108 | 250 | 313 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-21 | 250 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-12 | 250 | 314 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 251 | 262 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-10 | 348 | 399 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-24 | 348 | 408 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 348 | 408 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.006 | 349 | 407 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-34 | 349 | 413 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 349 | 407 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 389 | 409 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 568 aa Download sequence Send to blast |
MGDWLGFSLT PHISIVDADH TAAAGENDDA TAAEDHSFLP PCTTTPIFSH SLDSLEDSFR 60 PSPSPPQPEW RYDNREDPKL EDFLGSCYST SPPHQTHLVE HESKVTYSSL DQINNNFNIN 120 IPPNNLENIH YNYQRYQYYP NTYFPQNVQT QPCQFQAQAQ LVESSATLSR FKSWLRQTQC 180 QKSEDGGVNE GSPVKALALT IKPSSPSGFA VSQSREIVAV DQTRKRGAGK SNREVVPRKS 240 IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQGGYDKEE KAAKAYDLAA 300 LKYWGPTTHI NFPISIYEKE LEEMKNMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG 360 RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDIGR YDVKRICSSS 420 TLIAGDLAKR SSKESPNRLE DYNSCASSSS PQPLLAITNG KQSEELTNMI WSNDNGGYPQ 480 ITDVRTNMSA DPLSAHSSPN ENGGSSSNGM EVELRDGSGA ADYSQAYFST LQGPKFSDGA 540 NASDHDPNRL GNMALVNQVP MFALWNE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017232686.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-129 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A166EPA2 | 0.0 | A0A166EPA2_DAUCS; Uncharacterized protein | ||||
STRING | EOY27240 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-109 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_007644 |
Publications ? help Back to Top | |||
---|---|---|---|
|