PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007644
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 568aa    MW: 63249.6 Da    PI: 6.8325
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007644genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12249305155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aaka++ a++k++g
  DCAR_007644 249 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAAKAYDLAALKYWG 305
                  78*******************433.44555535555.779999**************98 PP

2AP248.12.9e-15348399155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  DCAR_007644 348 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 399
                  78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-9249305IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-14249315IPR016177DNA-binding domain
CDDcd000184.55E-18249315No hitNo description
PROSITE profilePS5103217.108250313IPR001471AP2/ERF domain
SMARTSM003801.7E-21250319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-12250314IPR001471AP2/ERF domain
PRINTSPR003673.9E-6251262IPR001471AP2/ERF domain
PfamPF008475.7E-10348399IPR001471AP2/ERF domain
CDDcd000186.10E-24348408No hitNo description
SuperFamilySSF541711.5E-17348408IPR016177DNA-binding domain
PROSITE profilePS5103219.006349407IPR001471AP2/ERF domain
SMARTSM003809.4E-34349413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18349407IPR001471AP2/ERF domain
PRINTSPR003673.9E-6389409IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MGDWLGFSLT PHISIVDADH TAAAGENDDA TAAEDHSFLP PCTTTPIFSH SLDSLEDSFR  60
PSPSPPQPEW RYDNREDPKL EDFLGSCYST SPPHQTHLVE HESKVTYSSL DQINNNFNIN  120
IPPNNLENIH YNYQRYQYYP NTYFPQNVQT QPCQFQAQAQ LVESSATLSR FKSWLRQTQC  180
QKSEDGGVNE GSPVKALALT IKPSSPSGFA VSQSREIVAV DQTRKRGAGK SNREVVPRKS  240
IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQGGYDKEE KAAKAYDLAA  300
LKYWGPTTHI NFPISIYEKE LEEMKNMTRQ EFVANLRRKS SGFSRGASVY RGVTRHHQHG  360
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGT SAVTNFDIGR YDVKRICSSS  420
TLIAGDLAKR SSKESPNRLE DYNSCASSSS PQPLLAITNG KQSEELTNMI WSNDNGGYPQ  480
ITDVRTNMSA DPLSAHSSPN ENGGSSSNGM EVELRDGSGA ADYSQAYFST LQGPKFSDGA  540
NASDHDPNRL GNMALVNQVP MFALWNE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232686.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-129AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A166EPA20.0A0A166EPA2_DAUCS; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-109AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]