PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NAC | ||||||||
Protein Properties | Length: 414aa MW: 47239.3 Da PI: 4.8939 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.8 | 2.8e-46 | 80 | 205 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 pG+rF+P d+el+v+yL +kv++++l+ + ikev++yk++P+++ k ekewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v kge DCAR_005363 80 LPGYRFNPFDHELIVHYLLRKVNKQRLPH-NKIKEVELYKYNPEEITKtDQGLVEKEWYFFTPRDRKYKNGNRPNRAAGDGYWKATGADKKVSY-KGE 175 69************************999.77**************8423334788*************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg +k Lvfy+g+apkg kt+W+mhe+r+ DCAR_005363 176 IVGYRKALVFYQGKAPKGDKTNWIMHEFRV 205 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-51 | 78 | 232 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.203 | 79 | 232 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-24 | 81 | 205 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MEKIDSKLQV DVDSVTTQNY ENVKEEDEEA TSNYNNGGLM AKDEPIIEIE DNADPVSNEN 60 IDYYPPVAVY VNDNDDIECL PGYRFNPFDH ELIVHYLLRK VNKQRLPHNK IKEVELYKYN 120 PEEITKTDQG LVEKEWYFFT PRDRKYKNGN RPNRAAGDGY WKATGADKKV SYKGEIVGYR 180 KALVFYQGKA PKGDKTNWIM HEFRVQSPTE RARTHDGDMR LDDWVLCRIY KKDDKVKKAP 240 RQNHTVENSQ SEENSPIRVP GEKSPATTAI QFPTPVTTNI CRDVMESHLP CRIPANPFSF 300 SDASLPNNLL FSPSLAVDSP QPLNDDAYDL PLFPNQFESY NQDEFNNISM DSLDDFSSLS 360 NYKQNYEYVS TNNFRNDFVV FPNARKNNPG LPNNSLVVTS QSVASSPAGH SST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 81 | 238 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 81 | 238 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 81 | 238 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 81 | 238 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-57 | 81 | 238 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-57 | 81 | 238 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 81 | 238 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233235.1 | 1e-163 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | A0A166CZF8 | 0.0 | A0A166CZF8_DAUCS; Uncharacterized protein | ||||
STRING | EOY32709 | 2e-74 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-58 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005363 |