PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004795
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 846aa    MW: 93100.6 Da    PI: 5.7483
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004795genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95.2e-20315414199
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  e+ ++v
  DCAR_004795 315 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGVPIRMKDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PEG-MLV 409
                  99**************************777889999***************9989999999***9.********************776.444.577 PP

                  EEE-S CS
           B3  95 kvfrk 99 
                  + +rk
  DCAR_004795 410 MGCRK 414
                  77775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-21311412IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-29311417IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-24313414No hitNo description
PfamPF023625.2E-17315414IPR003340B3 DNA binding domain
SMARTSM010192.0E-22315415IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898315416IPR003340B3 DNA binding domain
PROSITE profilePS5105014.307553603IPR011124Zinc finger, CW-type
PfamPF074962.6E-11558600IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MESSNNNNNT CMNEACRATT SSGEWKKGWV LKSGGLAALC YNCGSAYENL IFCDTFHREE  60
SGWRECKFCG KHIHCGCIAS KSLHDYLDSG GVGCLSCIKF SETQLIRQIQ NPSDDIFGGL  120
GTLAAICDPQ SSVIENYMEG KIVTKGKLTK PSKSMEGSQS NGHDLFLQSQ QGEQNLSSVP  180
TKKEVNMLPK GEVGTGVSHV SQHSNKLTIV SKPDATPQPQ GPKDMYESLA QPSLNFSFGA  240
HLSTSNSMRP LPGEGVEGRD KNKVPPFQQG QRSRQILPKS SKPGIVIRAQ GSNGTASQTR  300
VARPPVEGRG RMPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPINQSEGV PIRMKDIKGK  360
EWTFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDTVTFS RIDPEGMLVM GCRKAANSGD  420
NRDMQDSSTP SLPNGGGIAD DLVSAVKVDQ PTDAFDWMRK EEQRGQINGE STQQQMGQPE  480
KKKSRIIGSK SKRLLMRNED ANELQITWEE AQELLRPSPS AKPTIVLVDN HEFEEYDDPP  540
VFGKKTIFTA RESGEQEQWA QCDNCSKWRR LPADVLLPAN WICSDNIWDS NRCSCSAPDE  600
MDPKKLENCF RDTKKKKLLE NGQECEPSRL DALASAAVFG DPTEDSGEPS LVTTTRHPRH  660
RPGCTCIVCI QPPSGKGKHK PTCICNVCMT VKRRFKTLML RKKKRQEREA EINREKTQIP  720
LRSESEVDGT SEYALLHVNG SETDKERSVV KVDLALSSNK GDLDLNCDPN REDDSQIAEA  780
TGTSLASFVP VASLTSDICT GGDSVPPTLG ACLISQAVDE NEEHLPEETN VTSMDVEEEQ  840
GDEEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-6131242020128B3 domain-containing transcription repressor VAL1
5yzz_C3e-6131242020128B3 domain-containing transcription repressor VAL1
5z00_C3e-6131242020128B3 domain-containing transcription repressor VAL1
5z00_G3e-6131242020128B3 domain-containing transcription repressor VAL1
5z00_K3e-6131242020128B3 domain-containing transcription repressor VAL1
5z00_M3e-6131242020128B3 domain-containing transcription repressor VAL1
6j9a_A3e-6131242021129B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1691702KRRFKTLMLRKK
2691704KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229561.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X2
TrEMBLA0A166JGH00.0A0A166JGH0_DAUCS; Uncharacterized protein
STRINGXP_009772834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2