PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004562
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 266aa    MW: 30178.1 Da    PI: 6.1792
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004562genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.21.4e-101781266
     trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
                 Wt+qe l L++  + +e++  ++ +  ++W+ + +++++ g++rs +qCk+kw+ l  +y ++++
  DCAR_004562 17 WTHQEHLILVNEITAVERDCLNTFSSFQKWQIIVENCHALGLNRSLNQCKKKWNTLFDDYNELRN 81
                 ***********************9************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-51675IPR009057Homeodomain-like
PfamPF138371.8E-81681No hitNo description
Gene3DG3DSA:1.10.10.601.7E-51674IPR009057Homeodomain-like
PROSITE profilePS500907.1081773IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSNSTTLRTR SQAAPDWTHQ EHLILVNEIT AVERDCLNTF SSFQKWQIIV ENCHALGLNR  60
SLNQCKKKWN TLFDDYNELR NFDAEVYGAI EEFVRVRDGR GELGSDPDLD PGDELLVDVV  120
ANAHSVLPHA KKYKLKSMPK KHFLEGWGAR RKSSKNVRKP NKSCRSEVKV EVECPKESVD  180
VKSMKRENNQ EEVEKVTIEL LNSAEQINVV LEAKLVEEVN CVLADIGSAK TTQAVDVRRQ  240
GDELITCLEN YTHTIDQLRQ ILNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017237442.10.0PREDICTED: uncharacterized protein LOC108210595
TrEMBLA0A166J8M00.0A0A166J8M0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.15e-37sequence-specific DNA binding transcription factors