PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004491
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CPP
Protein Properties Length: 569aa    MW: 63016.2 Da    PI: 8.9003
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004491genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.3e-15102141242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfaag +C+  C+C++C+N+ e+
  DCAR_004491 102 KQKQCNCKNSRCLKLYCECFAAGIYCNG-CNCTNCHNNVEH 141
                  89**************************.********9876 PP
2TCR48.41.9e-15186225140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgCnCkks ClkkYCeCf+a+ +Cse+C+C dCkN+e
  DCAR_004491 186 KHNKGCNCKKSWCLKKYCECFQANIMCSENCRCIDCKNCE 225
                  589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-17101141IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.348102226IPR005172CRC domain
PfamPF036381.2E-11103138IPR005172CRC domain
SMARTSM011141.3E-17186227IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11189224IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSTFTCISVD SKVESPKPRQ HSHAESIRPQ HSHVELLRSR QHINSELKKA ESPKPRHPIN  60
VELKKTESPK PRQQNTVEFK KIESPKVRQQ SNVEFKDGTI KKQKQCNCKN SRCLKLYCEC  120
FAAGIYCNGC NCTNCHNNVE HESARREAVG ATLERNPNAF RSKIAKSPHR SQDNRIEAGE  180
VTTVGKHNKG CNCKKSWCLK KYCECFQANI MCSENCRCID CKNCEGSEEA RALRQGEHTN  240
VMAFMQHGST QAFGYIPQAI KKRKIQSLFT GEAPANTLDN RSAQKYSQET FLTSLSNSSH  300
LPSIPLHAAA ARATMLRSSD SMYRSQLAAI RGLKDAKELC SRLVVVSAEA SSKLAGKKLT  360
ANENAEIDQC ETSSTTSNQL HKDKVESRVQ VLSGGDKVQT GSSGSDPVDI QHERAMSPGT  420
LELMCDEQDR TFLEAQSPSV VGGCSKQPKI SSSTTQGFTD LYAEQERLVL TNFLNCLNRL  480
VTSGSMQVMH PSSSQTVREG QQEPLQNGIK DFKLQRNVYL QQQIVVPSSQ ITSDCNAMCF  540
FRKPRLPAAV HSGDASAKFY PANGRTTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-29942332130Protein lin-54 homolog
5fd3_B3e-29942332130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150357e-36AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230944.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X2
SwissprotQ9SZD11e-114TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A166J5Z40.0A0A166J5Z4_DAUCS; Uncharacterized protein
STRINGcassava4.1_023118m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-104Tesmin/TSO1-like CXC domain-containing protein