PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004135
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 832aa    MW: 91834 Da    PI: 7.5432
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004135genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17333432198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l+ sd+++ +rlvlpkk+ae++  +++++e++ l+++d +g++W + +++  +++s++y+l+ G     ++ +L +gD+v+F + +  e++lv+
  DCAR_004135 333 FEKTLSASDAGRMSRLVLPKKCAEAYlpEISNPEGIPLMMKDMKGNEWMFHFRFwpNNNSRMYLLE-GVTPCIQSMQLVAGDTVTFCRLE-PEGTLVM 428
                  99**************************778889999***************99777777778777.*******************9655.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  + ++
  DCAR_004135 429 GGRK 432
                  7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-27330436IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-20331432No hitNo description
SuperFamilySSF1019362.49E-19331431IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-17333434IPR003340B3 DNA binding domain
PROSITE profilePS5086310.405333434IPR003340B3 DNA binding domain
PfamPF023623.2E-14333430IPR003340B3 DNA binding domain
PROSITE profilePS5105012.741591641IPR011124Zinc finger, CW-type
PfamPF074961.4E-9596638IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MALCFNPMCK QPVTERSGRG WRCETGQFAD LCPRCASAYE DGNFCEVFHL TASGWRCCEC  60
CGKQIHCGCV VSRHMFILLD AGGIKCMACV KKSSVLTPNP AWPPPLYYHG SSPDEVKDLL  120
VKNWSSIVGS GPVPWREAPS WFNKNTSKVE LNLKIPSQVE VLGGIDRLYA HKGAPNCSLD  180
KNKKWESSGR ITNGSPSGGA LENVGNDVSG SKYEEQPTTN PNVTPQSNIS ILEPSTQTSH  240
FCPGLNPEFI REITEKDKVS GINACVIPPP AINNFFPSSS GVESNSRAQT HNGNPRGGGE  300
AQSQLPLSNG PRITNQELQA ISGHPRTAVT FLFEKTLSAS DAGRMSRLVL PKKCAEAYLP  360
EISNPEGIPL MMKDMKGNEW MFHFRFWPNN NSRMYLLEGV TPCIQSMQLV AGDTVTFCRL  420
EPEGTLVMGG RKSSTPPGNQ SKESINTGNE LSTHREVTTR ASRPGESFSA PIHVEDNMIS  480
SSLLTTSQAN SADPKNKWTE ADNFKTAKND VPGGEIFLSK KKNSTFGSNS KRLRMGNNQI  540
IELEITLKEV QGLLRPPSDY APQIVIIDGN EIAEFEEPPV IGRPTILATD CVGKFQWAQC  600
EDCCKWRRIP SDILLPSRWT CYKNSWDPER SLCSVAQELI PEELEDLLIT AKKQKFKKQD  660
EPDSVDALEG LNELANLAIH EKGGILPLSR TTSKHPRHRP GCTCIVCIQS PGGKGPKHRQ  720
TCTCNACVTI KRRFQTIMSK HEMKQTEDKR QKLQQPEDIL RCSDNGNCSS SHDAVTNDGS  780
GHDSYKMKYF ESPFKRQIDL NVQPEGEEDL SPFSNSGSMM RLLQNATGRF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-523114341124B3 domain-containing transcription repressor VAL1
5yzz_C3e-523114341124B3 domain-containing transcription repressor VAL1
5z00_C3e-523114341124B3 domain-containing transcription repressor VAL1
5z00_G3e-523114341124B3 domain-containing transcription repressor VAL1
5z00_K3e-523114341124B3 domain-containing transcription repressor VAL1
5z00_M3e-523114341124B3 domain-containing transcription repressor VAL1
6j9a_A3e-523114342125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235139.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A166ITQ60.0A0A166ITQ6_DAUCS; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-106HSI2-like 1