PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.388650.2
Common NameWRKY-21
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 256aa    MW: 28450.1 Da    PI: 10.24
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.388650.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31189246359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Cucsa.388650.2 189 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 246
                     99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-18140185IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.8E-34175247IPR003657WRKY domain
PROSITE profilePS5081130.067182248IPR003657WRKY domain
SuperFamilySSF1182901.96E-27185247IPR003657WRKY domain
SMARTSM007742.0E-38187247IPR003657WRKY domain
PfamPF031061.7E-27189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQGSGKRRRM DHLQGRNLQM GPLCLGNPSL ELNTNAKTCS IQQIQSQSAA LYHHHHHHLL  60
QNRVVLNNNP NPPQPEVVYL RSSNGVNLNF DSSSCTQHTM SSTRSFISSL SIDGSVANLD  120
GSAFHLIGAP RSSDQNSYHK RKCNGRGEDG SVKCGSNGRC HCSKKRKHRV KRSIKVPAIS  180
NKLADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLIVTYE  240
GEHNHPRIPS QPANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20180249775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840360.0GU984036.1 Cucumis sativus WRKY protein (WRKY51) mRNA, complete cds.
GenBankHF9124230.0HF912423.1 Cucumis sativus mRNA for WRKY transcription factor 21 (WRKY-21 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146948.20.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043362e-91WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLN1K0K30.0N1K0K3_CUCSA; WRKY transcription factor 21
STRINGXP_004146948.10.0(Cucumis sativus)
STRINGXP_004165669.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-85WRKY DNA-binding protein 21