PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.388650.1
Common NameCsa_7G378410, WRKY51
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 353aa    MW: 39183.3 Da    PI: 9.5538
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.388650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31286343359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Cucsa.388650.1 286 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 343
                     99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-18237282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-33272344IPR003657WRKY domain
PROSITE profilePS5081130.067279345IPR003657WRKY domain
SuperFamilySSF1182903.4E-27282344IPR003657WRKY domain
SMARTSM007742.0E-38284344IPR003657WRKY domain
PfamPF031062.9E-27286343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEEVEEANRE AVESCHKVLN LLTLPSSSQD HLKLRSCLMA ETGEAVFKFR KVLCLLDSSG  60
LGHARVRKKK KVNNFLFNSS SSSSSSSSPF PLPQSLFLET YSPDCRMDHL QGRNLQMGPL  120
CLGNPSLELN TNAKTCSIQQ IQSQSAALYH HHHHHLLQNR VVLNNNPNPP QPEVVYLRSS  180
NGVNLNFDSS SCTQHTMSST RSFISSLSID GSVANLDGSA FHLIGAPRSS DQNSYHKRKC  240
NGRGEDGSVK CGSNGRCHCS KKRKHRVKRS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG  300
SPHPRGYYKC SSMRGCPARK HVERCLEEPS MLIVTYEGEH NHPRIPSQPA NT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-20277346775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840360.0GU984036.1 Cucumis sativus WRKY protein (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146948.20.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-110WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLE7CEY50.0E7CEY5_CUCSA; WRKY protein
STRINGXP_004165669.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-83WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]