PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.385670.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 277aa    MW: 31074.9 Da    PI: 8.5143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.385670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006198120123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Cucsa.385670.1  98 YECKTCNRTFPSFQALGGHRASH 120
                     99**********99999998887 PP
2zf-C2H213.90.00016171193123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Cucsa.385670.1 171 HECSICGLEFTSGQALGGHMRRH 193
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-1397122IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-597125No hitNo description
PROSITE profilePS5015710.65898125IPR007087Zinc finger, C2H2
SMARTSM003550.05298120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4163194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.91E-6167196No hitNo description
PfamPF139124.2E-12170195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785171198IPR007087Zinc finger, C2H2
SMARTSM003550.015171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
METPDEFMPS NHQIHSILSL KRRRRNKRLR LLSSPPDTTS SSSCEEEDMA NCLILLAQGD  60
SAVHRRPTAQ NFQHPLKINP KTSFNFEMAK TTSGFYVYEC KTCNRTFPSF QALGGHRASH  120
KKPKTTTMVT ALEDQPEEPQ LIKIAASPVQ IPTKTVTAGT NFQTHKGGKV HECSICGLEF  180
TSGQALGGHM RRHRATTTVS SAQQVVVATN TEEDNNTNHH HHHRHRNSVE RKERNILELD  240
LNLPAPEEDL RETKFQFTAT PQTIVFSAPT LVDCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926LKRRRRNK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6855730.0LN685573.1 Cucumis melo genomic scaffold, unassembled_sequence33065.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657041.11e-157PREDICTED: zinc finger protein ZAT5
SwissprotQ681X43e-57ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0A0KBJ41e-157A0A0A0KBJ4_CUCSA; Uncharacterized protein
STRINGXP_008466979.11e-150(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-54C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]