PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.382190.1

Common Name

Csa_7G007880, LOC101215703

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 564aa MW: 61621.9 Da PI: 6.8431

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.382190.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.6e-10	421	478	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ + l+++ Cucsa.382190.1 421 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 478 9********************************************9998877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-18	417	481	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	419	482	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-8	421	469	No hit	No description
SuperFamily	SSF57959	3.09E-11	421	472	No hit	No description
Pfam	PF00170	7.9E-9	421	475	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.15E-24	422	471	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MGDTEDARTD NLRNLQCSFG TSSSSALKHH FSMDQLKISQ MTCSQGRPQH FQSNFLGDNN 60 RRIGIPPCPN SPQVPPISPY SQIPVSRPMN QHSYNSVSTH SRSLSQPSFF SLDSLPPLSP 120 SPFRDSPSTS NSDQVSADTS MEDRDASSHS LLPPSPYTRA NSSKMSDALP PRKAHRRSNS 180 DIPFGLSSMI QSPPVLPFSG SGGLERSTSS KENAGIFKQA SQFVKREPSL EKSIDNHMEG 240 MGEKKSEGDT VDDLFSAYMN LDNIDLFNSS GTNDKNGHEN REDLDSRGSG TKTGGESSDN 300 EAESSVNESG DNSQMPGLNS SAEKREGIKR TAGGDIAPNN RHYRSISMDS FMGKLQFGDE 360 SPKMPPTPPG IRPGQLSSNN LVDGNSTPFS LEFGNGEFSG AELKKIMAND KLAEIALTDP 420 KRAKRILANR QSAARSKERK MRYISELEHK VQTLQTEATT LSAQLTLLQR DSVGLTNQNN 480 ELKFRLQAME QQAQLRDALN EALTAEVQRL KLATTDINAQ SHPSNGVMAQ SSMNHHGLQL 540 QQHQQQQHMQ QNGSSATKPE SNQ*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MGDTEDARTD NLRNLQCSFG TSSSSALKHH FSMDQLKISQ MTCSQGRPQH FQSNFLGDNN  60
RRIGIPPCPN SPQVPPISPY SQIPVSRPMN QHSYNSVSTH SRSLSQPSFF SLDSLPPLSP  120
SPFRDSPSTS NSDQVSADTS MEDRDASSHS LLPPSPYTRA NSSKMSDALP PRKAHRRSNS  180
DIPFGLSSMI QSPPVLPFSG SGGLERSTSS KENAGIFKQA SQFVKREPSL EKSIDNHMEG  240
MGEKKSEGDT VDDLFSAYMN LDNIDLFNSS GTNDKNGHEN REDLDSRGSG TKTGGESSDN  300
EAESSVNESG DNSQMPGLNS SAEKREGIKR TAGGDIAPNN RHYRSISMDS FMGKLQFGDE  360
SPKMPPTPPG IRPGQLSSNN LVDGNSTPFS LEFGNGEFSG AELKKIMAND KLAEIALTDP  420
KRAKRILANR QSAARSKERK MRYISELEHK VQTLQTEATT LSAQLTLLQR DSVGLTNQNN  480
ELKFRLQAME QQAQLRDALN EALTAEVQRL KLATTDINAQ SHPSNGVMAQ SSMNHHGLQL  540
QQHQQQQHMQ QNGSSATKPE SNQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681798	0.0	LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658570.1	0.0	PREDICTED: transcription factor VIP1
TrEMBL	A0A0A0K0G6	0.0	A0A0A0K0G6_CUCSA; Uncharacterized protein
STRING	XP_004148547.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2272	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-147	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.382190.1
Entrez Gene	101215703

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]