PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.378480.1

Common Name

Csa_3G750930, LOC101209675

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 514aa MW: 58805.5 Da PI: 7.2322

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.378480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.4	4.6e-29	98	183	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+ ++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Cucsa.378480.1 98 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 183 8***********************************889*************************97..66678*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.29E-20	98	163	No hit	No description
Pfam	PF13837	4.9E-20	98	184	No hit	No description
PROSITE profile	PS50090	6.737	98	156	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0010200	Biological Process	response to chitin
GO:0046621	Biological Process	negative regulation of organ growth
GO:0048442	Biological Process	sepal development
GO:0048498	Biological Process	establishment of petal orientation
GO:0090428	Biological Process	perianth development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MDDQYPLSDL RHLLSTPPSR SHFPSSSSIP HHDLSSAAFR HHHTPYDLIM MMPRDTPLPD 60 FRSDSTTTPS ASILSPHPVH NAFDPETASI AADCATARWP RQETLTLLEI RSRLDSKFKE 120 ANQKGPLWDE VSRIMAEEHN YQRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKNYRFFRQ 180 LEALYGETSN SPSLPDSHFV GDTNLRFQQN GTNNPTASAP MSHEAHQKHY CDSLSLSNTS 240 EFETSASSDG NDDLGSVGVM DNDSMEKRRK KRGGKCWKAK IKQFIDSQMR KLIDKQEAWL 300 EKLMKTLEQK EKERMIRDEE WRRQEVSRMD RERSFWAKER AWIESRDAAL MDALQRLTGR 360 ELRDNNQYNS SPDHGLIVAE HHRNNNENQN EDGSEILNNN TARELLADNN DNYQRKIIDN 420 HGNKKRKENS TSTTTTYNLY FQQHTDSSLY SRGGGGQYDG ATHIKEQSPN SSNAGGSGGG 480 HVVQDNCFRF LMGEGDQSQA GLWENFGLKL NNGX

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MDDQYPLSDL RHLLSTPPSR SHFPSSSSIP HHDLSSAAFR HHHTPYDLIM MMPRDTPLPD  60
FRSDSTTTPS ASILSPHPVH NAFDPETASI AADCATARWP RQETLTLLEI RSRLDSKFKE  120
ANQKGPLWDE VSRIMAEEHN YQRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKNYRFFRQ  180
LEALYGETSN SPSLPDSHFV GDTNLRFQQN GTNNPTASAP MSHEAHQKHY CDSLSLSNTS  240
EFETSASSDG NDDLGSVGVM DNDSMEKRRK KRGGKCWKAK IKQFIDSQMR KLIDKQEAWL  300
EKLMKTLEQK EKERMIRDEE WRRQEVSRMD RERSFWAKER AWIESRDAAL MDALQRLTGR  360
ELRDNNQYNS SPDHGLIVAE HHRNNNENQN EDGSEILNNN TARELLADNN DNYQRKIIDN  420
HGNKKRKENS TSTTTTYNLY FQQHTDSSLY SRGGGGQYDG ATHIKEQSPN SSNAGGSGGG  480
HVVQDNCFRF LMGEGDQSQA GLWENFGLKL NNGX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137874.1	0.0	PREDICTED: trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-106	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A0A0LEF7	0.0	A0A0A0LEF7_CUCSA; Uncharacterized protein
STRING	XP_004137874.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	3e-87	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.378480.1
Entrez Gene	101209675

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]