PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.368960.1 | ||||||||
Common Name | Csa_5G255670, LOC101204772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25901.9 Da PI: 7.2358 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Cucsa.368960.1 85 FSCNYCQRKFFSSQALGGHQNAH 107 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 68 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.19E-6 | 83 | 113 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 85 | 112 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGSPMFNLEC EKDSEMSSKA FSDTAKDSGT TSCLTNSIKA NHDQGLVSLD LTLHFNSNDI 60 DAKGSGETSS DVVGHISGPT SLRIFSCNYC QRKFFSSQAL GGHQNAHKRE RTMAKRAMRM 120 GMFSNRYTSL ASLPLHGSAY RSLGIEAHAA VHRKILPGER PFSARPGAMI DQGYIGMQYF 180 VEEDDVGPFW PGSFRRVNGE FIDSTAREAS EIPSLNSDTR MAPSTTSTSS PDLTLRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681900 | 0.0 | LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140418.1 | 1e-178 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 1e-36 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A0A0KMD6 | 1e-177 | A0A0A0KMD6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004140418.1 | 1e-177 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 7e-38 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.368960.1 |
Entrez Gene | 101204772 |