PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366590.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 293aa    MW: 33950.9 Da    PI: 8.475
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-1411103199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+ ++  +l+++ l lp+kf++++ ++       tl  ++g +W+++l  ++ +g++ + +GW eFv+   ++ g f+vF+l+g  +f  +v 
  Cucsa.366590.1  11 FFKIVLH-QNLTQQKLDLPNKFVKNNAHS-LLFNNATLSLPDGSKWNFQL--TRLDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCF--NVL 99 
                     5666655.4555666********888544.4556899999**********..99999988888*********************9999*9..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  Cucsa.366590.1 100 IFDT 103
                     9987 PP
2B358.89.8e-19195280187
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f  ++ ps+  + ++l+lp+ f e++  k  es++++le  +gr W+v +  ++  +++r+ l++GWk+F+ +n+L+egD++vF+l+++
  Cucsa.366590.1 195 FMVTMRPSYIQTGNCLSLPRIFSERYI-K--ESVDVKLEVGDGRIWKVWCgvRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNK 280
                     778999******************994.3..5899*************98667778888899***********************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.9E-184104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-185104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.69E-159102No hitNo description
PROSITE profilePS5086310.77110104IPR003340B3 DNA binding domain
SMARTSM010192.0E-1011104IPR003340B3 DNA binding domain
PfamPF023623.2E-1111103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20189280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20190280IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-20193283No hitNo description
SMARTSM010199.6E-9195285IPR003340B3 DNA binding domain
PROSITE profilePS5086312.83195292IPR003340B3 DNA binding domain
PfamPF023624.6E-17195280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGLFTSPNPH FFKIVLHQNL TQQKLDLPNK FVKNNAHSLL FNNATLSLPD GSKWNFQLTR  60
LDGKICFLRG WPEFVNFYAV QPGYFLVFQL KGICCFNVLI FDTSATEIDY PMRRLPVIVP  120
KSESDDEGES IQILHEESDE HLPISEYNER EDGRSSPESM RPMNPRKTQQ VLTENQLVVV  180
RRASSFKCRT KNPSFMVTMR PSYIQTGNCL SLPRIFSERY IKESVDVKLE VGDGRIWKVW  240
CGVRWAFTRR RTELKGGWKR FAVDNELEEG DICVFELMNK TPKREGERSL NN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819131e-130LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132651e-130LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148065.11e-160PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A0A0LM041e-159A0A0A0LM04_CUCSA; Uncharacterized protein
STRINGXP_004148065.11e-160(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-33B3 family protein