PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.366520.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 335aa    MW: 39137.4 Da    PI: 10.4197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.366520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-1512104199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv ++   l+++ l lp+kf++++gg+     ++tl  ++g  W+++l  +k +g++ +++GW eFv+   ++ g f+vF+l+g  +f  +v 
  Cucsa.366520.1  12 FFKVILHQT-LTQQKLDLPNKFVKNNGGS-LLFNKVTLFLPDGANWKIQL--KKLDGKICFRRGWPEFVQFYSVQPGHFLVFQLKGICCF--NVL 100
                     667665554.55556********999877.56679***************..********************************999999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  Cucsa.366520.1 101 IFDT 104
                     9987 PP
2B360.23.6e-19219307190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f  ++ ps+  + + l+lp++f e++  k  es++++le  +gr W+v +  ++  +++r+ l++GWk+F+ +n+LkegD++vF+l+++++ 
  Cucsa.366520.1 219 FMVTMRPSYIQTGNYLSLPRRFGEKYI-K--ESVDVKLEVGDGRCWRVWCgvRWAFTRRRTELKGGWKRFAVDNELKEGDICVFELMKKNGS 307
                     778999********************4.3..5899*************88667777888899***********************9975443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-205105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-205105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-1610103No hitNo description
PROSITE profilePS5086311.82911105IPR003340B3 DNA binding domain
PfamPF023624.5E-1212104IPR003340B3 DNA binding domain
SMARTSM010191.9E-1512105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-22212305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-21214306IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21217306No hitNo description
PROSITE profilePS5086312.971219316IPR003340B3 DNA binding domain
PfamPF023621.6E-17219307IPR003340B3 DNA binding domain
SMARTSM010191.0E-12219315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MANLFRSPNP HFFKVILHQT LTQQKLDLPN KFVKNNGGSL LFNKVTLFLP DGANWKIQLK  60
KLDGKICFRR GWPEFVQFYS VQPGHFLVFQ LKGICCFNVL IFDTSATEID YPIRRLLDLI  120
PKSRNEDEEE SIQILNEMVL KKRRMEKEEE TPPAYRSLRG LKKMMRKNAK VKIAKNRGIT  180
SDEDEGDLEM DNSRRQSNHR GIVKKRASWF KSRRNNPSFM VTMRPSYIQT GNYLSLPRRF  240
GEKYIKESVD VKLEVGDGRC WRVWCGVRWA FTRRRTELKG GWKRFAVDNE LKEGDICVFE  300
LMKKNGSVLT TSFIGIVSIQ EVYTCFRIER VDST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819130.0LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457957.20.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0LMR60.0A0A0A0LMR6_CUCSA; Uncharacterized protein
STRINGXP_008457957.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein