 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.366500.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
B3 |
| Protein Properties |
Length: 290aa MW: 33809.9 Da PI: 9.9681 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.366500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 43.9 | 4.2e-14 | 20 | 118 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgr.sefel 92
ffkv + ++lk + l +p kf++e+g k + ++ l+ +gr+W+v l+ ++ + r+++ GW+ Fv+ + f+vFk++++ s+f
Cucsa.366500.1 20 FFKVVMA-SALKDQKLEIPTKFVREYGVKAFATNQICLKVaADGRKWNVGLTKSNDGTRVWFHdHGWQTFVEFYSVGLEYFLVFKYERQsSSF-- 111
7777765.5556666***********87777888899999899********88888888666549*********************9876777.. PP
EEEEE-S CS
B3 93 vvkvfrk 99
+v +f++
Cucsa.366500.1 112 YVVIFDR 118
9999997 PP
|
| 2 | B3 | 34.4 | 3.9e-11 | 226 | 284 | 45 | 94 |
EEEEEE..EEETTEEEE-.........TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 45 sWevkliyrkksgryvlt.........kGWkeFvkangLkegDfvvFkldgrsefelvv 94
s +++ +++++ ++y+ + +GW++F k+n+Lk+gDf+vF+++g s+++ +
Cucsa.366500.1 226 SSNFRWNWEGSCCWYMTKmmkkraeliSGWRKFKKDNNLKVGDFCVFEMIGLSSTRISF 284
556666667777777666777777777*********************99877776655 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDSFNYWKNR PRKALDNPHF FKVVMASALK DQKLEIPTKF VREYGVKAFA TNQICLKVAA 60
DGRKWNVGLT KSNDGTRVWF HDHGWQTFVE FYSVGLEYFL VFKYERQSSS FYVVIFDRTA 120
TEIEYPIKII CLDDAEEKRS VPKETHSKTG EVNFGAVELM DNKKKLWPTT TNQRERAMAS 180
ASAFQSMTLN PSFMCKMSTS HIHPGKSLYT KKVCRDAYRK VHGEHSSNFR WNWEGSCCWY 240
MTKMMKKRAE LISGWRKFKK DNNLKVGDFC VFEMIGLSST RISFKVEIF*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681913 | 1e-134 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. |
| GenBank | LN713265 | 1e-134 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
