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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.365230.1 |
| Common Name | Csa_6G040600, LOC101205577 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
GRAS |
| Protein Properties |
Length: 463aa MW: 51506.1 Da PI: 6.5842 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.365230.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 321.6 | 1.6e-98 | 69 | 449 | 2 | 373 |
GRAS 2 velLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsPi 90
+lL+++A+av ++++ la+ +L rl+el+sp+ ++++Rl+ay+++A + l + +++ + + + ++++ +++laa++l++e+sP+
Cucsa.365230.1 69 YHLLTAAADAVLGDHKScdLAHVILVRLNELVSPSHgTNLERLTAYYAQAFQDLLDSapVANKTHHHNhHIHQRDDHTPTDVLAAFQLLQEMSPY 163
699********876655559***********777554*****************9985434444444425556666669**************** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
+kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qa+ s p+ +p+lRiT++++ ++g s +++etg+rL fA+++g pf+f+
Cucsa.365230.1 164 VKFGHFTANQAILEAVAEDRRVHIVDYDIMEGIQWASLMQAFVSSPS-APHLRITAISRGANGrrSIGTVQETGRRLVAFAASIGQPFSFHQCKL 257
********************************************766.59*********999899999************************999 PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysalfdsleakl 275
++ e+++++ L++ +gEal+Vn++l+l ++ +s ++ ++L+ kslsP++v++ve+e+ h+ + ++ +fl++le ysa++dslea +
Cucsa.365230.1 258 DSDESFRPSGLKLVKGEALVVNCMLHLPHFSYRSPESIA---SFLSGAKSLSPRIVTLVEEEIGHGPTidgDYKVQFLDSLERYSAIYDSLEAVI 349
9****************************9866555554...8*********************9744444************************ PP
GRAS 276 preseerikvErellgreivnvvacegaer..rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
p ++++r+ vEr++lg++i+ + g++r ++++e W e+le++G+k+v++s + +qa+lll ++ dgyrvee ++ lvlgWk+++L
Cucsa.365230.1 350 PMKNRARALVERVFLGPRISATLRRIGQRRwsTAEMEDNCLWGEKLEKMGLKTVKISFANHCQARLLLGLFN-DGYRVEELgNNKLVLGWKSKRL 443
************************99988633778888999*******************************.******98799999******** PP
GRAS 368 vsvSaW 373
+svS W
Cucsa.365230.1 444 LSVSIW 449
****** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MALAINNPPK DIALSNYSTS TNNSDDHCHL AGNWNYGSPI VDWETFSGTH NDFLDDRDEE 60
DEFKGLRLYH LLTAAADAVL GDHKSCDLAH VILVRLNELV SPSHGTNLER LTAYYAQAFQ 120
DLLDSAPVAN KTHHHNHHIH QRDDHTPTDV LAAFQLLQEM SPYVKFGHFT ANQAILEAVA 180
EDRRVHIVDY DIMEGIQWAS LMQAFVSSPS APHLRITAIS RGANGRRSIG TVQETGRRLV 240
AFAASIGQPF SFHQCKLDSD ESFRPSGLKL VKGEALVVNC MLHLPHFSYR SPESIASFLS 300
GAKSLSPRIV TLVEEEIGHG PTIDGDYKVQ FLDSLERYSA IYDSLEAVIP MKNRARALVE 360
RVFLGPRISA TLRRIGQRRW STAEMEDNCL WGEKLEKMGL KTVKISFANH CQARLLLGLF 420
NDGYRVEELG NNKLVLGWKS KRLLSVSIWG SSSSSSSLSD SE*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
