PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 390aa MW: 43255.9 Da PI: 4.7005

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.359880.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	3e-19	114	163	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Cucsa.359880.1 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 163 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.03E-32	114	172	No hit	No description
SuperFamily	SSF54171	2.75E-22	114	173	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.092	114	171	IPR001471	AP2/ERF domain
SMART	SM00380	6.7E-37	114	177	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-32	114	173	IPR001471	AP2/ERF domain
Pfam	PF00847	8.9E-12	115	163	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	115	126	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	137	153	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0070483	Biological Process	detection of hypoxia
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MCGGAIISGF IPPIRSRRVT GEHLWPNLKQ PAFGNQLSKP VKSDIIDIDD DFETDFQHFK 60 DDSDLEFDVE ELLDTKPLAF SAAGDHPVPS ARASKSVEFS GQAEKSAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PDETPRTSGK 180 RSAKANLQEP LPKTSLAKTQ PDLIQNNNFV NNSDEAYYST MGFLEEKPLT NQLPNMDSLA 240 TNGDIVIKTS PASSDVVPMY FNSDQGSNSF DYSDFGWGEQ GARTPEISSF LSSAMENEDS 300 HFVEDASPKK KVKYSPENTV VSQGSEKTLS EELSSFESEM KYFQMPYLDG SWDASMDAFL 360 AGETGNQDGG NSVDLWTFDD LAGMVGNVF*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MCGGAIISGF IPPIRSRRVT GEHLWPNLKQ PAFGNQLSKP VKSDIIDIDD DFETDFQHFK  60
DDSDLEFDVE ELLDTKPLAF SAAGDHPVPS ARASKSVEFS GQAEKSAKRK RKNQYRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PDETPRTSGK  180
RSAKANLQEP LPKTSLAKTQ PDLIQNNNFV NNSDEAYYST MGFLEEKPLT NQLPNMDSLA  240
TNGDIVIKTS PASSDVVPMY FNSDQGSNSF DYSDFGWGEQ GARTPEISSF LSSAMENEDS  300
HFVEDASPKK KVKYSPENTV VSQGSEKTLS EELSSFESEM KYFQMPYLDG SWDASMDAFL  360
AGETGNQDGG NSVDLWTFDD LAGMVGNVF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-21	114	171	2	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	4e-21	113	179	13	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00204	DAP	Transfer from AT1G53910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141728.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBL	A0A0A0K9C0	0.0	A0A0A0K9C0_CUCSA; Uncharacterized protein
STRING	XP_004141728.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4808	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.2	2e-81	related to AP2 12

Link Out ? help Back to Top
Phytozome	Cucsa.359880.1
Entrez Gene	101210678

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]