PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 276aa MW: 30158.3 Da PI: 8.4192

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.353330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.1	2.8e-19	128	161	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + Cucsa.353330.1 128 CSDCNTTTTPLWRSGPQGPKSLCNACGIRQRKAR 161 *******************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	4.66E-13	121	161	No hit	No description
SMART	SM00401	3.0E-20	122	174	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	13.099	122	158	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.0E-16	126	161	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.52E-13	127	164	No hit	No description
PROSITE pattern	PS00344	0	128	153	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	5.2E-17	128	161	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0009910	Biological Process	negative regulation of flower development
GO:0010187	Biological Process	negative regulation of seed germination
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0010380	Biological Process	regulation of chlorophyll biosynthetic process
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MKEGCERSRL LEKQVEEEDD NDHHQIMMKK QDDHNGSTKY WMSSKMRLMQ KMMINTNHNY 60 KKVMINGTDH GGANNSDHHQ KATRNYNSIN NEGNGGKWEA MTGKSSSSSI SCNSSNIGSV 120 QNNGVRVCSD CNTTTTPLWR SGPQGPKSLC NACGIRQRKA RRAMADLAAN SGGGLVAETT 180 EAAATSGKKE KHKEKKSRLS CEGDNNGGNN NVGDQVKIND KYCNNNNNTD DHISNNNNLK 240 SKSSGPSAFG KVFPRDEEEA AILLMELSCG LLHTC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654173.1	1e-165	PREDICTED: GATA transcription factor 21-like
TrEMBL	A0A0A0L3Z9	1e-164	A0A0A0L3Z9_CUCSA; Uncharacterized protein
STRING	XP_004141424.1	1e-156	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1992	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	1e-22	GATA family protein

Link Out ? help Back to Top
Phytozome	Cucsa.353330.1
Entrez Gene	101214798

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]