PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 343aa MW: 36939.5 Da PI: 10.5686

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.352410.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	32.2	2.2e-10	321	340	3	22
-SS-EEEEEEE--TT-SS-E CS WRKY 3 DgynWrKYGqKevkgsefpr 22 D y+WrKYGqK++kgs++pr Cucsa.352410.3 321 DDYSWRKYGQKPIKGSPHPR 340 99*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.4E-17	271	317	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.0E-9	308	340	IPR003657	WRKY domain
PROSITE profile	PS50811	12.232	314	342	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-8	317	340	IPR003657	WRKY domain
Pfam	PF03106	1.9E-6	321	340	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MLLLNNNMAV ELLVGFGDAT TSNHFTPNME ENAAVSAVQE AASAGIQSVQ NFLRLMSHTT 60 NHQHSQHDSS TSSTPNNGYQ AVADSVVNKF KKVISLLDRN RTGHARFRRA PVLTTTTTTT 120 TTPPPPPPPK VKPQHQDPSS SSPISVPPVQ VKKQESVSAF KVYCPTPSSV VRLPPLPHNN 180 PHQPSHPSNT FQAQQNTSSV VLKNGSVDRK DATTTINFAA SPPISAANSY ISSLTGDTES 240 LQPSLSSGFQ FTHMSQVSSA GKPPLSSSSL KRKCNSMEDS AMKCGSSSGR CHCSKKSRKN 300 RIKRVIRVPA VSSKLADIPP DDYSWRKYGQ KPIKGSPHPR LE*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MLLLNNNMAV ELLVGFGDAT TSNHFTPNME ENAAVSAVQE AASAGIQSVQ NFLRLMSHTT  60
NHQHSQHDSS TSSTPNNGYQ AVADSVVNKF KKVISLLDRN RTGHARFRRA PVLTTTTTTT  120
TTPPPPPPPK VKPQHQDPSS SSPISVPPVQ VKKQESVSAF KVYCPTPSSV VRLPPLPHNN  180
PHQPSHPSNT FQAQQNTSSV VLKNGSVDRK DATTTINFAA SPPISAANSY ISSLTGDTES  240
LQPSLSSGFQ FTHMSQVSSA GKPPLSSSSL KRKCNSMEDS AMKCGSSSGR CHCSKKSRKN  300
RIKRVIRVPA VSSKLADIPP DDYSWRKYGQ KPIKGSPHPR LE*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00450	DAP	Transfer from AT4G24240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984027	0.0	GU984027.1 Cucumis sativus WRKY protein (WRKY33) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652902.1	0.0	PREDICTED: probable WRKY transcription factor 7-like isoform X1
TrEMBL	A0A0A0L0C5	0.0	A0A0A0L0C5_CUCSA; Uncharacterized protein
STRING	XP_004172480.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	2e-55	WRKY DNA-binding protein 7

Link Out ? help Back to Top
Phytozome	Cucsa.352410.3

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]