PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 493aa MW: 53971.9 Da PI: 6.2657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.338740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.4e-40	139	199	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Cucsa.338740.1 139 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSA 199 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	136	196	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	141	197	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	143	197	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	145	181	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MSEPKDPAIK LFGKTIPLPD PSPATPHLPS SLPILSPPHH TTPLPNHDHD SSSSTFDVDA 60 EDLELDKDAV SEKSGGAKLE NGDGGLSVST EEFTNSDTSV VRSENSKVLS GDESNPSTTT 120 KTDEQNETSN SQEKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG 180 GTMRNVPVGA GRRKNKSSAS HHRQIIVSEA LQHARTDVPN GIHHSTLKPN ANVLAFGSDA 240 PLCESMASIL NIADQTRQNT PKIPVAYENG ENDDQSPESA PTPSFINNEE GKTGPQDQVI 300 HNCQGFLPPH VPFFPGTPWP YPWNSPQWSS PVPPPTFYPP GIPMPFYPTA PFWGCTVPGA 360 WPIPWVSQPP SLSPVPQNHA PNSPTLGKHS RDENVTKQSD FGEDEQQKDT KTEKCLWIPK 420 TLRIDDPGEA AKSSIWATLG IKNDKTDSVS EGLFKAFQSK KIDEKNHKTE ASPVLQVNPA 480 ALSRSIKFHE SS*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MSEPKDPAIK LFGKTIPLPD PSPATPHLPS SLPILSPPHH TTPLPNHDHD SSSSTFDVDA  60
EDLELDKDAV SEKSGGAKLE NGDGGLSVST EEFTNSDTSV VRSENSKVLS GDESNPSTTT  120
KTDEQNETSN SQEKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG  180
GTMRNVPVGA GRRKNKSSAS HHRQIIVSEA LQHARTDVPN GIHHSTLKPN ANVLAFGSDA  240
PLCESMASIL NIADQTRQNT PKIPVAYENG ENDDQSPESA PTPSFINNEE GKTGPQDQVI  300
HNCQGFLPPH VPFFPGTPWP YPWNSPQWSS PVPPPTFYPP GIPMPFYPTA PFWGCTVPGA  360
WPIPWVSQPP SLSPVPQNHA PNSPTLGKHS RDENVTKQSD FGEDEQQKDT KTEKCLWIPK  420
TLRIDDPGEA AKSSIWATLG IKNDKTDSVS EGLFKAFQSK KIDEKNHKTE ASPVLQVNPA  480
ALSRSIKFHE SS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147502.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A0A0LG12	0.0	A0A0A0LG12_CUCSA; Uncharacterized protein
STRING	XP_004168502.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-105	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Cucsa.338740.1
Entrez Gene	101213936

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]