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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.336220.5 |
| Common Name | Csa_6G166210, LOC101221933 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
C3H |
| Protein Properties |
Length: 376aa MW: 41028 Da PI: 8.3167 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.336220.5 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 28.3 | 3.1e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS
zf-CCCH 10 artGtCkyGdrCkFaHg 26
+rtG C+yG++C+F+H+
Cucsa.336220.5 1 MRTGSCSYGSNCRFNHP 17
8***************9 PP
|
| 2 | zf-CCCH | 36.3 | 9.1e-12 | 36 | 60 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tGtCkyG++Ck++H++
Cucsa.336220.5 36 QPDCEYFLKTGTCKYGGSCKYHHPR 60
789********************96 PP
|
| 3 | zf-CCCH | 37.5 | 4.1e-12 | 83 | 105 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C++++rtG Ck+G +CkF+H++
Cucsa.336220.5 83 SCPYYLRTGSCKFGVSCKFNHPQ 105
6********************97 PP
|
| 4 | zf-CCCH | 40 | 6.3e-13 | 219 | 244 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++Cr+f+ +GtCkyG+ CkF+H++
Cucsa.336220.5 219 DQPECRYFMNNGTCKYGSDCKFHHPK 244
689*********************96 PP
|
| 5 | zf-CCCH | 34.9 | 2.5e-11 | 261 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+++ +G CkyG++CkF H+
Cucsa.336220.5 261 PGQAICSYYNMYGLCKYGPSCKFDHP 286
5789*********************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF00642 | 8.3E-7 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 30 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 10.793 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.1E-6 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.915 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-9 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.09E-6 | 38 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 39 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.49E-6 | 77 | 106 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.483 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.8E-4 | 80 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.9E-10 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 83 | 104 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.558 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.8E-6 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.3E-10 | 219 | 244 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.46E-7 | 221 | 245 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 223 | 243 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.9E-6 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.112 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-8 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.29E-6 | 263 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.7E-5 | 265 | 285 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MRTGSCSYGS NCRFNHPVYV GQGALYNGEL PERIGQPDCE YFLKTGTCKY GGSCKYHHPR 60
DRRGAGPVTF NILGLPMRQE EKSCPYYLRT GSCKFGVSCK FNHPQPSPVG NMLPQARPGA 120
LGSGGTPFMP SSGVPYPAWS MPRVQYMPGP CVQGQQSYVP VLVSPSQGAI AAQDWNTYVS 180
NVNPILPNLG YNNINLEDSY SNGQLALSTS TPTLPDRPDQ PECRYFMNNG TCKYGSDCKF 240
HHPKQRIAQS ATNALGLPSR PGQAICSYYN MYGLCKYGPS CKFDHPSPTY PYNYGFTLPL 300
LDSSIIKYPS NNFTMSSHET LPGTVSKSSE WVQKADPSNN KRRTTDSKVI IDSTGEEATS 360
VSCSLPGGSE SLQDQ*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681921 | 1e-156 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. |
| GenBank | LN713265 | 1e-156 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
