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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.336220.4 |
Common Name | Csa_6G166210, LOC101221933 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C3H |
Protein Properties |
Length: 406aa MW: 44457.7 Da PI: 7.3022 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.336220.4 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 40.3 | 5.2e-13 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C +++rtG C+yG++C+F+H+
Cucsa.336220.4 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
5789*********************9 PP
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2 | zf-CCCH | 36.2 | 1e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tGtCkyG++Ck++H++
Cucsa.336220.4 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
789********************96 PP
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3 | zf-CCCH | 37.3 | 4.5e-12 | 138 | 160 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C++++rtG Ck+G +CkF+H++
Cucsa.336220.4 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
6********************97 PP
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4 | zf-CCCH | 39.9 | 7e-13 | 249 | 274 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++Cr+f+ +GtCkyG+ CkF+H++
Cucsa.336220.4 249 DQPECRYFMNNGTCKYGSDCKFHHPK 274
689*********************96 PP
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5 | zf-CCCH | 34.8 | 2.8e-11 | 291 | 316 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+++ +G CkyG++CkF H+
Cucsa.336220.4 291 PGQAICSYYNMYGLCKYGPSCKFDHP 316
5789*********************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.305 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.85E-6 | 51 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-5 | 52 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 132 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 137 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 138 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 247 | 275 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 247 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 249 | 274 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-7 | 251 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 253 | 273 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 290 | 317 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-8 | 292 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-5 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 295 | 315 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MPDNLQVQRN DVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVYVGQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLPQ ARPGALGSGG 180 TPFMPSSGVP YPAWSMPRVQ YMPGPCVQGQ QSYVPVLVSP SQGAIAAQDW NTYVLALSTS 240 TPTLPDRPDQ PECRYFMNNG TCKYGSDCKF HHPKQRIAQS ATNALGLPSR PGQAICSYYN 300 MYGLCKYGPS CKFDHPSPTY PYNYGFTLPL LDSSIIKYPS NNFTMSSHET LPGTVSKSSE 360 WVQKADPSNN KRRTTDSKVI IDSTGEEATS VSCSLPGGSE SLQDQ*
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Functional Description ? help
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Source |
Description |
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681921 | 1e-156 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. |
GenBank | LN713265 | 1e-156 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |