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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.336220.1 |
Common Name | Csa_6G166210, LOC101221933 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C3H |
Protein Properties |
Length: 431aa MW: 47189.6 Da PI: 6.8734 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.336220.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 40.2 | 5.6e-13 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C +++rtG C+yG++C+F+H+
Cucsa.336220.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72
5789*********************9 PP
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2 | zf-CCCH | 36.1 | 1.1e-11 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C +f++tGtCkyG++Ck++H++
Cucsa.336220.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115
789********************96 PP
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3 | zf-CCCH | 37.2 | 4.8e-12 | 138 | 160 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27
C++++rtG Ck+G +CkF+H++
Cucsa.336220.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160
6********************97 PP
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4 | zf-CCCH | 39.8 | 7.5e-13 | 274 | 299 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++Cr+f+ +GtCkyG+ CkF+H++
Cucsa.336220.1 274 DQPECRYFMNNGTCKYGSDCKFHHPK 299
689*********************96 PP
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5 | zf-CCCH | 34.7 | 3e-11 | 316 | 341 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+++ +G CkyG++CkF H+
Cucsa.336220.1 316 PGQAICSYYNMYGLCKYGPSCKFDHP 341
5789*********************8 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 14.305 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 51 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 52 | 71 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 132 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-10 | 137 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 138 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 272 | 299 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 272 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-7 | 276 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 278 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 317 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 318 | 343 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 320 | 340 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 431 aa
Download sequence Send
to blast |
MPDNLQVQRN DVPNQSPDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVYVGQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLPQ ARPGALGSGG 180 TPFMPSSGVP YPAWSMPRVQ YMPGPCVQGQ QSYVPVLVSP SQGAIAAQDW NTYVSNVNPI 240 LPNLGYNNIN LEDSYSNGQL ALSTSTPTLP DRPDQPECRY FMNNGTCKYG SDCKFHHPKQ 300 RIAQSATNAL GLPSRPGQAI CSYYNMYGLC KYGPSCKFDH PSPTYPYNYG FTLPLLDSSI 360 IKYPSNNFTM SSHETLPGTV SKSSEWVQKA DPSNNKRRTT DSKVIIDSTG EEATSVSCSL 420 PGGSESLQDQ *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681921 | 1e-156 | LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039. |
GenBank | LN713265 | 1e-156 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |