 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.331900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 234aa MW: 26901.8 Da PI: 10.0077 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.331900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.5 | 3.6e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRr g+lKKA ELS+LCdaev +iifsstgkly+yss
Cucsa.331900.1 10 RIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSS 59
8***********************************************96 PP
|
| 2 | K-box | 83.7 | 4.1e-28 | 78 | 171 | 8 | 99 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++ ++ + +++e+a Lk++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R kK++ l ++i el++k + +++en +L k+l+
Cucsa.331900.1 78 QlmNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKTLSDEITELKQKGNHMHQENVELYKRLD 171
234678899********************************************************************************99875 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.875 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 4.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 6.67E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 8.82E-42 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 1.1E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.1E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.1E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.5E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.839 | 86 | 176 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007584 | Biological Process | response to nutrient |
| GO:0048527 | Biological Process | lateral root development |
| GO:0071249 | Biological Process | cellular response to nitrate |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008134 | Molecular Function | transcription factor binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KARELSILCD AEVGLIIFSS TGKLYDYSSS 60
SIRSITDRYN KMKEEQNQLM NSVSELQFWK REAAALKQQL HYLQECHRQL MGEELSGLSV 120
KDLQNLESQL EMSLKGVRVK KEKTLSDEIT ELKQKGNHMH QENVELYKRL DMTRKENAEL 180
QMKAYGPMEI DKTSSSSQQF TITNRYSMPA LQLRQPQPQN NETPGIKLGL QLQ*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
