PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 352aa MW: 39076.8 Da PI: 5.8328

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.312530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.2	9.9e-18	247	281	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Cucsa.312530.1 247 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 281 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	8.8E-84	21	337	IPR016679	Transcription factor, GATA, plant
Gene3D	G3DSA:3.30.50.10	1.4E-14	241	278	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.558	241	277	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.7E-18	241	291	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.47E-15	242	305	No hit	No description
CDD	cd00202	8.50E-15	246	293	No hit	No description
PROSITE pattern	PS00344	0	247	272	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	247	281	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MEGPEYFQPG FSSQFSTEDR QSSDANKTNT AAAPPTTADH FIVEDLLDFS NDDDVVFTDG 60 TFDNQTPTST DSSTLTLLDS CNSYPNTGNA HNYHFADANF STDLGVPYDD LAELEWLSNF 120 VEDSFSTDDL EKLSLISGMN SRADVHDDDA SKAREFQTGF NRNHSPGFRH EMSVVPAKAA 180 RSKRSRAAPC IWNSRLSVLS PTNSSSETDV VVTLTPHPNT AKKTTKKKEI PDDTSSAAGN 240 NGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN 300 SHRKVMELRR QKEMMRAQQQ QQYLHHESMG FDHVSNDDDY LIHQHIGPLY Q*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MEGPEYFQPG FSSQFSTEDR QSSDANKTNT AAAPPTTADH FIVEDLLDFS NDDDVVFTDG  60
TFDNQTPTST DSSTLTLLDS CNSYPNTGNA HNYHFADANF STDLGVPYDD LAELEWLSNF  120
VEDSFSTDDL EKLSLISGMN SRADVHDDDA SKAREFQTGF NRNHSPGFRH EMSVVPAKAA  180
RSKRSRAAPC IWNSRLSVLS PTNSSSETDV VVTLTPHPNT AKKTTKKKEI PDDTSSAAGN  240
NGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN  300
SHRKVMELRR QKEMMRAQQQ QQYLHHESMG FDHVSNDDDY LIHQHIGPLY Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00048	PBM	Transfer from AT4G32890	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652614.1	0.0	PREDICTED: GATA transcription factor 9-like
Swissprot	O82632	8e-84	GATA9_ARATH; GATA transcription factor 9
TrEMBL	A0A0A0LH13	0.0	A0A0A0LH13_CUCSA; GATA transcription factor
STRING	XP_008466068.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1364	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	2e-70	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	Cucsa.312530.1
Entrez Gene	101221905

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]