PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.308970.1
Common NameCsa_5G615290, LOC101219202
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 405aa    MW: 46299.5 Da    PI: 7.1533
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.308970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.83e-28125210187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW++vs+ m +e g++rs k+Ckek++nl k+ykk+keg+ +r+  + +++++f+qlea
  Cucsa.308970.1 125 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDQVSRLMaEEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 210
                     8*************************************7788****************************985..5557*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.82E-21124190No hitNo description
PfamPF138372.5E-20124211No hitNo description
PROSITE profilePS500906.655124183IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSDKFTHPDL RHLMADDKPN FPATPQTLDS FFLHHSHLTR GFSPVPPPPK FQPLQLVLTE  60
PTGLLHFGCS DNSTATGGGG GSSTAANATV SSAPFLRRNK LVIDNEWCSP YGNDVVGGSN  120
GFNSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR LMAEEYGYKR SGKKCKEKFD  180
NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGQSNDQIS SPIIESNFYR NSIARSETPP  240
PEKYPSGGEN HQEAGGGMSL SFTISSDFET SSSGNYHDDD LSAIAFMMNQ KKVEKSGETN  300
VSKRDQGGVS NNNNNKGESW REEIEKMVDM KMSRLMEVQE NWMEKIMSSV EDGEKERIMK  360
EEEWRKQEMA RFDHEMSEFC ARERAWLHAR ELAFMEIVKR FADKX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168176KRSGKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150493.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A0A0KUT90.0A0A0A0KUT9_CUCSA; Uncharacterized protein
STRINGXP_004167426.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.16e-65Trihelix family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]