PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.308740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 357aa MW: 39770 Da PI: 7.166 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H Cucsa.308740.1 239 HECAICGAEFTSGQALGGHMRRH 261 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.0E-12 | 163 | 188 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.076 | 164 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.44E-7 | 164 | 186 | No hit | No description |
SMART | SM00355 | 0.8 | 164 | 186 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 166 | 186 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.44E-7 | 234 | 261 | No hit | No description |
Pfam | PF13912 | 6.8E-12 | 238 | 263 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 239 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MEVVDHQENS DMGSKEQQQA ALIAKGKRTK RQRLHSPIPF AVPTNSSSGD LGGVVVVVAD 60 HDDHHSDFVP QNNDHYQSNT NFSPSSSSAH DDQLVQQFNN NTSTTTEEEE DMANCLILLA 120 QGRPPCSPLT KQLDTGPFHH VTNNVRRFSA ENVEKGGGVG CYAYECKTCY RTFPSFQALG 180 GHRASHKKPK AMEAEKKHIL SSDDEEIQFK NNNITTTHSL SLQLNQRGSL NSSGKAKVHE 240 CAICGAEFTS GQALGGHMRR HRAMPVGTNT ALSLTPMNME TEDQRQPKRQ RSVLSLDLDL 300 NLPAPQEHDQ RSESKFLMKS NQQQQQQQPQ QQHNKQQQQQ QQPLVFPART LVDCHY* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142506.2 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A0A0KRI9 | 0.0 | A0A0A0KRI9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142506.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04390.1 | 6e-56 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.308740.1 |