PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.301800.1 | ||||||||
Common Name | Csa_5G162030, LOC101211862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 19261.6 Da PI: 10.6474 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ F++ L H++ H Cucsa.301800.1 4 HKCKLCSRAFTNGRALGGHMKAH 26 79******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.3E-7 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.66E-5 | 4 | 28 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MVSHKCKLCS RAFTNGRALG GHMKAHLTAP AAALPFPPPK PPPSPSSSSS SDHDESTLYE 60 LRGNSKGRNF RFSDPVFNIV LQDRESETES KNPTRKRSKR WRKPEVEPEP ASSVSDASPE 120 EDLAVCLMML SRDRWIKNQN HNERRSSFEE LGSKIRVKKG IRRKKKCEKX |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 153 | 164 | KIRVKKGIRRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 1e-142 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 1e-142 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152430.1 | 1e-121 | PREDICTED: zinc finger protein ZAT9 isoform X1 | ||||
TrEMBL | A0A0A0KMX8 | 1e-119 | A0A0A0KMX8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004169199.1 | 1e-120 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16610.1 | 1e-24 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.301800.1 |
Entrez Gene | 101211862 |
Publications ? help Back to Top | |||
---|---|---|---|
|