PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.286080.1

Common Name

Csa_5G601530, LOC101215974

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 474aa MW: 53435.8 Da PI: 5.3073

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.286080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	290	336	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ + ErrRR++i++++ +Lr l+P+ + K++ a+i A+ YI++L+ Cucsa.286080.1 290 KNLMTERRRRNKIRDRLYTLRALVPNiS------KMDRASIIVDAIGYIRELE 336 55689*******************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.9E-15	11	157	IPR025610	Transcription factor MYC/MYB N-terminal
SuperFamily	SSF47459	1.57E-15	285	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.408	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-15	288	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-8	290	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-11	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.31E-4	408	470	No hit	No description
Gene3D	G3DSA:3.30.70.260	0.001	408	471	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MRSFEEALEF LRPLVEIKLW DYCIVWKSRD DDSLRFIDWV GCCCSGGVSG AGGKEEAGET 60 IPAALCKDTR FRHFRRTNAC QALAQFPSSI SLNTGVHGDV SISNQPMWLT SGEVSYFSSF 120 SHELTGTRVL IPVSGGIVEL FATKRMPREG EVIDFVMAHC NFSLEQEFET ESALNAGLNE 180 KILNSSTKYY SLNWPDPQAI LGFKSKLETL PSVSQSSSFP GCGEGSSSGS KPSPGLFNQP 240 IRTSFESKAG MRQEDLLEQQ RNVVLDHSKI LQKDEAKTGE KQEKEVYKSK NLMTERRRRN 300 KIRDRLYTLR ALVPNISKMD RASIIVDAIG YIRELEENVK SLQNELIQLE HKDCQKNKHL 360 KVSPLEKTND DIDSWPFVQD DQPMFILDEE KPMEVEVEVM QINERDFLIK LFCKQKQGGV 420 VSSIEAMDSL GLQVIDVNIT TFGGMVLNIF HVEANENDIQ PKRLRDSLIK LTS*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MRSFEEALEF LRPLVEIKLW DYCIVWKSRD DDSLRFIDWV GCCCSGGVSG AGGKEEAGET  60
IPAALCKDTR FRHFRRTNAC QALAQFPSSI SLNTGVHGDV SISNQPMWLT SGEVSYFSSF  120
SHELTGTRVL IPVSGGIVEL FATKRMPREG EVIDFVMAHC NFSLEQEFET ESALNAGLNE  180
KILNSSTKYY SLNWPDPQAI LGFKSKLETL PSVSQSSSFP GCGEGSSSGS KPSPGLFNQP  240
IRTSFESKAG MRQEDLLEQQ RNVVLDHSKI LQKDEAKTGE KQEKEVYKSK NLMTERRRRN  300
KIRDRLYTLR ALVPNISKMD RASIIVDAIG YIRELEENVK SLQNELIQLE HKDCQKNKHL  360
KVSPLEKTND DIDSWPFVQD DQPMFILDEE KPMEVEVEVM QINERDFLIK LFCKQKQGGV  420
VSSIEAMDSL GLQVIDVNIT TFGGMVLNIF HVEANENDIQ PKRLRDSLIK LTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135248.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBL	A0A0A0KQ91	0.0	A0A0A0KQ91_CUCSA; Uncharacterized protein
STRING	XP_004167566.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12265	30	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-66	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.286080.1
Entrez Gene	101215974

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]