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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.263980.1 |
Common Name | Csa_4G507380, LOC101216254 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C3H |
Protein Properties |
Length: 306aa MW: 31700.9 Da PI: 9.5442 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.263980.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 35 | 58 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Cucsa.263980.1 35 KSKPCTKFFSTAGCPFGESCHFLH 58
7789******************** PP
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2 | zf-CCCH | 27.4 | 5.6e-09 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck+Gd+C+FaHg+
Cucsa.263980.1 102 KTRMCNKYNTAEGCKFGDKCNFAHGE 127
89**********************96 PP
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3 | zf-CCCH | 38.1 | 2.5e-12 | 272 | 296 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC++fa+ G C +G+rC+FaHg
Cucsa.263980.1 272 YKTKLCDNFAK-GSCTFGERCHFAHG 296
9**********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.91 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.709 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 33 | 59 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-4 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-8 | 35 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-14 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-8 | 99 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.041 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.94E-16 | 167 | 248 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 7.2E-17 | 177 | 246 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.3E-13 | 177 | 247 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 178 | 242 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.19E-15 | 180 | 242 | No hit | No description |
Pfam | PF00013 | 6.0E-12 | 180 | 244 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-16 | 267 | 302 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-9 | 270 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-8 | 271 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.558 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 272 | 296 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MDMRKRGRPE AAFNSNGSFK KHKQELESLS TVGSKSKPCT KFFSTAGCPF GESCHFLHYV 60 PGGYNVVAQM MNLAPVGAQP SRNIAAPPSV TNGGPSAPSQ VKTRMCNKYN TAEGCKFGDK 120 CNFAHGEWEL GRPNPPSHDN PRAMGGGGGG GGGVHMVGRM GGRMDLPPPG PAASFGASAT 180 AKISIDASLA GAIIGKGGIN SKQICRQTGA KLSIRDHESD PNLRNIELEG TFEQINEASA 240 MVRELIITVS MAGPGKASGG MGGGPAPTGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL 300 RKSGV*
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