PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.260270.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 451aa    MW: 50127.3 Da    PI: 7.3173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.260270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-07253310455
             AP2   4 kGV....rwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GV    ++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Cucsa.260270.1 253 VGVwlcgCRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 310
                     566666678*************4444.2344336655.779999**************98 PP
2AP250.45.5e-16353404155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cucsa.260270.1 353 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 404
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-15237320No hitNo description
PROSITE profilePS5103216.015238318IPR001471AP2/ERF domain
SMARTSM003802.3E-16251324IPR001471AP2/ERF domain
PfamPF008472.0E-5254310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-10259319IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-12260320IPR016177DNA-binding domain
SuperFamilySSF541715.17E-18353414IPR016177DNA-binding domain
CDDcd000182.05E-11353414No hitNo description
PfamPF008472.4E-10353404IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18354413IPR001471AP2/ERF domain
SMARTSM003803.5E-31354418IPR001471AP2/ERF domain
PROSITE profilePS5103219.177354412IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAPATNWLSF SLSPIEMLRS SDSPFLPFDS SSSSPSPHYL LDNFYHGWSN NNAANSHSKS  60
SQLFFNNQEE EAAAAAVKDD QTTIFLHPQT QTHHHHHHHH HHQPKLEDFL GDSSPMVRYS  120
DSQTDTQDSS LTHIYDHASA PYFPHDQQDL KTIAAFQAFS ANSGSEVDDS ASIPTTHIPS  180
AHSIDSSLTN NDFPSFSTGA LSLAVAQSSD TAPAPVVVAV DSDSSKKIAD TFGQRTSIYR  240
GVTRGKEKKM KHVGVWLCGC RHRWTGRYEA HLWDNSCRRE GQARKGRQGG YDKEEKAARA  300
YDLAALKYWG PTATTNFPVS NYAKELEEMK QVTRQEFIAS LRRKSSGFSR GASIYRGVTR  360
HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGLNAVTN FEMSRYDVEA  420
IAKSALPIGG AAKRLKLCLE SDQKPIPNHD Q
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818580.0LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452164.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-180AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3BU040.0A0A1S3BU04_CUCME; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_008452164.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-149AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]