PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.260110.1
Common NameCsa_3G116640, LOC101219379
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 359aa    MW: 40938.5 Da    PI: 6.1089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.260110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13157208155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  Cucsa.260110.1 157 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YVQRGDQASIIGGAIDFVKELE 208
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15148218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-8155205No hitNo description
PROSITE profilePS5088814.557156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-13157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MERLQGPINP CFYGEYSETG CSEQEFTNLG FEESEEVCLL TSSLEDKIPF LQMLQSVESQ  60
SFKEPNFQSL LKLQHLTKPW EGGVNKIQEL VQLFSSPINS ETKDQNQPPK SDRVFSECNQ  120
NQGISQTQMT KAPPVIKERR KRKRSKPTKN KEEVECQRMT HIAVERNRRR QMNDHLNVIK  180
SLIPTSYVQR GDQASIIGGA IDFVKELEQL LESLEALRKE RKGAEGECKG EQSEVRVASN  240
RRIGEGVCAE LRSEVAEIEV TMIQTHVNLK IRCPKRQDQL LKVIVALEDL RLTVLHLNIT  300
SQTAATMLYS FNLKIEDECK LESEEQIAAT VNEIFSFINN GRLVNEAKEN FRQYSGSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143RRKRKR
2139146RKRKRSKP
3157168RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134273.10.0PREDICTED: transcription factor bHLH67
TrEMBLA0A0A0L6W20.0A0A0A0L6W2_CUCSA; Uncharacterized protein
STRINGXP_004134273.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.12e-77bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]