PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 158aa MW: 17722.7 Da PI: 9.9633

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.260030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60	5.6e-19	90	141	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps+ g +r++lg++ ta++Aa a+++a+ +++g+ Cucsa.260030.1 90 QFRGVRRRP-WGKYAAEIRDPSKKG--ARIWLGTYHTAQDAALAYDRAAFQMRGA 141 58*****.******97744..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.3E-32	90	149	IPR001471	AP2/ERF domain
CDD	cd00018	3.44E-28	90	149	No hit	No description
PROSITE profile	PS51032	23.156	90	148	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-35	90	154	IPR001471	AP2/ERF domain
Pfam	PF00847	1.0E-12	91	140	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.4E-13	91	102	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-22	91	149	IPR016177	DNA-binding domain
PRINTS	PR00367	5.4E-13	130	150	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MLSSSSSSLE GSSSDLFHLE QIRRHLLEDD LGKGSTHNNV EDGIIRYDIS RSGAGWEMSN 60 NNNNMVDQMS SIIIRDNPEE KSQPRPRGLQ FRGVRRRPWG KYAAEIRDPS KKGARIWLGT 120 YHTAQDAALA YDRAAFQMRG AKAKLNFPHI ISSNNYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-30	87	153	2	68	ATERF1
3gcc_A	4e-30	87	153	2	68	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134277.1	1e-113	PREDICTED: ethylene-responsive transcription factor 1
TrEMBL	A0A0A0L893	1e-112	A0A0A0L893_CUCSA; Uncharacterized protein
STRING	XP_004155267.1	1e-113	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF512	33	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-30	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	Cucsa.260030.1
Entrez Gene	101220335

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]