PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.257390.1 | ||||||||
Common Name | Csa_3G126890, LOC105434822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 103aa MW: 11554.5 Da PI: 9.3484 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.3e-12 | 22 | 78 | 42 | 97 |
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 +g++W++ + + +++g+ + +k W++Fv++n Lk+gD +vF+l + s +++v+++ Cucsa.257390.1 22 RGKKWKIDY-HGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLeCSsSILKFRVQIL 78 69*******.55555568889*********************6535446666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 8.21E-10 | 1 | 79 | No hit | No description |
PROSITE profile | PS50863 | 12.421 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-12 | 16 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.28E-10 | 19 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-9 | 22 | 75 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
VLPAKFHSIL PAIVIPAVLL CRGKKWKIDY HGNRRGKALD SKQWRKFVND NCLKSGDAIV 60 FELLECSSSI LKFRVQILSG DIPLELHDKF SGETKETPIH LD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-149 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-149 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011650806.1 | 3e-70 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0A0L3V3 | 6e-69 | A0A0A0L3V3_CUCSA; Uncharacterized protein | ||||
STRING | VIT_15s0024g00930.t01 | 7e-30 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9722 | 26 | 40 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.257390.1 |
Entrez Gene | 105434822 |
Publications ? help Back to Top | |||
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