PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.253690.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 794aa    MW: 88604 Da    PI: 6.6264
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.253690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1179.8e-37130206177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv+gCe+d+se+k yhrrh+vC  +++a++v+++++++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Cucsa.253690.1 130 RCQVPGCEVDISELKGYHRRHRVCLRCANATAVVIDDETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 206
                     6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-28126192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.351128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-33129209IPR004333Transcription factor, SBP-box
PfamPF031103.5E-27131205IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MENPPPSPLS HPLPDVEMDI QLPMADDSST SLWDLGDLLD FAADDQFSFS LEQDNLPSAS  60
SHYLEIQSQT PPSNSDRIRK RDPRLTCSNF LAGRVPCACP EVDAMLEAEV AAAPGKKRAR  120
TARVGAGSVR CQVPGCEVDI SELKGYHRRH RVCLRCANAT AVVIDDETKR YCQQCGKFHV  180
LSDFDEGKRS CRRKLERHNN RRRRKPVDST PSMESDRSSM QLEDVSCDGD VGKDNILFNN  240
QTDQKEVVHL ESDDGLVTST VCSAPDQQNN VESGLTLVGT GEAQVDGGKD NSKSLASSYC  300
DNKSTYSSMC PTGRISFKLY DWNPAEFPRR LRLQIFEWLA NMPVELEGYI RPGCIILTAF  360
VAMPKFMWIK LLEDPTTHVH NFVVARGRPL WGRGNILVYL NNMIFHAMEG ESVMKIEMDM  420
QAPKLHYVHP TCFEAGKPME FVACGSHLRQ PKFRSLVSFG GKYLDHDQSF VLPHCQKEGN  480
ATWSDHQLFK ICIPHTENDI FGPAFVEVEN QSGLSNFIPI LIGDSETCSE MKAIQERLDM  540
SLLVEATGSS HDTCEHSSLR QKVYSELMMD ISWLLKKPSS EPMQQIMNSS QIQRFTRLLK  600
FLICNDSTVI LGRVLEHLKI VMENVESNVG VNGSNYPDLR FFEKYLDYAG DVLQLNLRKA  660
GNSVLHLGFL KPKGGHVSQS SSENKLVSVA PGTTLKMEPR ENGHFPAVAG SISTGNVETI  720
PLINEKLSEK ITIQEHSRKS CGLQFSGVLF RRQTTLFAVT FVAVCFGVCA ALVHSHKVGE  780
FAISIRRCLI DKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-41127209184squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191203RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651015.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A1S3AX800.0A0A1S3AX80_CUCME; squamosa promoter-binding-like protein 7
STRINGXP_008438777.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7