PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.253300.1

Common Name

Csa_3G153150

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 1166aa MW: 129269 Da PI: 8.8006

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.253300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.6e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+++E e++++a +++G++ Wk++a+ + +R+ +++ Cucsa.253300.1 46 QWSKDEVEQFYEAYRKYGKD-WKKVAAAVR-NRSTEMV 81 6***************99.*****.98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.12E-9	42	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.157	42	95	IPR017884	SANT domain
SMART	SM00717	1.1E-4	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-6	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	1.97E-6	47	81	No hit	No description
Pfam	PF06584	1.1E-31	633	733	IPR033471	DIRP domain
SMART	SM01135	2.7E-56	633	734	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1166 aa Download sequence Send to blast
MAPSRKSRSV NKRFSSANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR 60 KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLIGCQR 120 DSESEQESNE DSGAIRKPQK RLRGKSRSSN LKGSDAHFGD ASQSQLLLTN YGCLSLLKKR 180 RSGIKPHAVG KRTPRVPVSY SYDKDGRDKL FSPSKHNSKA KVDDPNDDDV AHEIALVLTE 240 ASQRDGSPQL SQTPNPKIES HVLSPIRNDR MRSESDMMST KFRCSEMDEG GCELSLGSTG 300 ADNADYDLGK STREVQRKGK RYYGKKPEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL 360 ENEDLDVKSV RSSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDTN AETEPPAKVK 420 EENLDVMGKS KMKGSHSVAG SEISALKTSK TGKAFGSNVG PISEAEGIQG SNNGNRKRKL 480 KSSPFKISSK DEDNDSRLHD TLKIKAADEA KSSVGKVKRS PHNAGLKSGK ISKPLDHHSS 540 SSTDHKREDG DYALSTAQVL SNNPVSLPTK LRSRRKMKLW KSQRDAKISD STSIDQLNIT 600 AQTIDDRQHD LKERHSSCLS WHKLRRWCIF EWFYSAIDFP WFAKCEFVEY LNHVGLGHIP 660 RLTRVEWGVI RSSLGRPRRF SAQFLKEEKQ KLNQYRESVR KHYAELRAGT REGLPTDLAR 720 PLSVGQRVIA IHPKTREIHD GSVLTVDYSR CRVQFDRPEL GVEFVMDIEC MPLNPVENMP 780 ANLSRHGVTL DKIFGNLNEV KINGLLKEAK IEDYMKSTSN DKLESTEGSV YISPSTHHIN 840 KLIKQAKVDL GCSNLQAKFG LSETVGIQQE TSSQPSALAQ IQAKEADVHA LSELSRALDK 900 KEVVVSELKR LNDEVLENQI NGDNLLKDSV NFKKQYAAVL LQLNEVNEQV SSALYCLRQR 960 NTYQGTSPLM FLKPVHDSGD PCSHSQEPGS HVAEIVGSSR AKAQTMIDEA MQAILALKKG 1020 ESNLENIEEA IDFVSNRLTV DDLALPTVRS AAADTSNAAP VSQNHFNACT SNTSTASFVV 1080 GPKSNGSSDK TEMEIPSELI AHCVATLLMI QKCTERQFPP SDVAQVLDSA VSSLQPCCPQ 1140 NLPLYAEIQK CMGIIRSQIL ALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1166 aa Download sequence Send to blast

MAPSRKSRSV NKRFSSANEA SSSKYVEDAS KSKQKKRKFA DLLGPQWSKD EVEQFYEAYR  60
KYGKDWKKVA AAVRNRSTEM VEALFTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLIGCQR  120
DSESEQESNE DSGAIRKPQK RLRGKSRSSN LKGSDAHFGD ASQSQLLLTN YGCLSLLKKR  180
RSGIKPHAVG KRTPRVPVSY SYDKDGRDKL FSPSKHNSKA KVDDPNDDDV AHEIALVLTE  240
ASQRDGSPQL SQTPNPKIES HVLSPIRNDR MRSESDMMST KFRCSEMDEG GCELSLGSTG  300
ADNADYDLGK STREVQRKGK RYYGKKPEVE ESMYNHLDDI KEACSGTEEG QKSGSLRGKL  360
ENEDLDVKSV RSSFKGPRKR SKKALFGDEC SAFDALQTLA DLSLMMPDTN AETEPPAKVK  420
EENLDVMGKS KMKGSHSVAG SEISALKTSK TGKAFGSNVG PISEAEGIQG SNNGNRKRKL  480
KSSPFKISSK DEDNDSRLHD TLKIKAADEA KSSVGKVKRS PHNAGLKSGK ISKPLDHHSS  540
SSTDHKREDG DYALSTAQVL SNNPVSLPTK LRSRRKMKLW KSQRDAKISD STSIDQLNIT  600
AQTIDDRQHD LKERHSSCLS WHKLRRWCIF EWFYSAIDFP WFAKCEFVEY LNHVGLGHIP  660
RLTRVEWGVI RSSLGRPRRF SAQFLKEEKQ KLNQYRESVR KHYAELRAGT REGLPTDLAR  720
PLSVGQRVIA IHPKTREIHD GSVLTVDYSR CRVQFDRPEL GVEFVMDIEC MPLNPVENMP  780
ANLSRHGVTL DKIFGNLNEV KINGLLKEAK IEDYMKSTSN DKLESTEGSV YISPSTHHIN  840
KLIKQAKVDL GCSNLQAKFG LSETVGIQQE TSSQPSALAQ IQAKEADVHA LSELSRALDK  900
KEVVVSELKR LNDEVLENQI NGDNLLKDSV NFKKQYAAVL LQLNEVNEQV SSALYCLRQR  960
NTYQGTSPLM FLKPVHDSGD PCSHSQEPGS HVAEIVGSSR AKAQTMIDEA MQAILALKKG  1020
ESNLENIEEA IDFVSNRLTV DDLALPTVRS AAADTSNAAP VSQNHFNACT SNTSTASFVV  1080
GPKSNGSSDK TEMEIPSELI AHCVATLLMI QKCTERQFPP SDVAQVLDSA VSSLQPCCPQ  1140
NLPLYAEIQK CMGIIRSQIL ALIPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-177	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-177	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004134200.2	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0A0L571	0.0	A0A0A0L571_CUCSA; Uncharacterized protein
STRING	XP_004159845.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Cucsa.253300.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]