PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.250870.1 | ||||||||
Common Name | Csa_3G180430, LOC101218216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 784aa MW: 86189.9 Da PI: 5.9503 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.6 | 3.2e-21 | 87 | 142 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+++qVk+WFqNrR+++k Cucsa.250870.1 87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRNELSRRLGLETKQVKFWFQNRRTQMK 142 7999*************************************************999 PP | |||||||
2 | START | 175.8 | 2.6e-55 | 295 | 515 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ + p+W +s+ e +n de+ ++f++s + ++ea r++++v+ ++ lve+l+d + +W e+++ +a+t+ Cucsa.250870.1 295 LALAAMNELVKMAQMDGPLWIRSRadsgkETLNLDEYSRTFPSSAGmkhtnWTTEATRDTTMVIINSLALVETLMDAN-RWAEMFPcliaRATTT 388 6899************************99***********99988**9999**************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vissg galqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + s+ +++lpSg+++++++ng skvtwveh+ Cucsa.250870.1 389 DVISSGmggtrnGALQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSIGEGSNSN---SFSGCKRLPSGCVVQDMPNGFSKVTWVEHT 480 **********************************************************9966...799999************************ PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r+l++sg +g ++w+atlqrqc Cucsa.250870.1 481 EYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCD 515 *********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-20 | 71 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 73 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 84 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-20 | 86 | 148 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.89E-20 | 87 | 144 | No hit | No description |
Pfam | PF00046 | 7.9E-19 | 87 | 142 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 119 | 142 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.227 | 285 | 519 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-28 | 286 | 516 | No hit | No description |
CDD | cd08875 | 2.27E-111 | 294 | 514 | No hit | No description |
SMART | SM00234 | 4.0E-34 | 294 | 516 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-47 | 295 | 515 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.18E-17 | 544 | 777 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MPGGAITDPS FLPYPIPSSM PSSSEFSSSL RKMDGYGEVC LLGDGFDPTG IVRIREDEYD 60 SRSGSDNIDG AVSGDDHDAN DEQPPKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRNELS 120 RRLGLETKQV KFWFQNRRTQ MKTQIERHEN AILKQENDKL RAENSVMKDA ISNPTCSTCG 180 GPSIPVHLSF EEHQLRIENA RLREELHRLY AVTNKFLGWP VVPFANHGSS PSSDSCLELS 240 VGRNGPGNLS TVSDSMGLNL GNELFSAGSV MPISKPDIGM LTNDIPLERT IYVDLALAAM 300 NELVKMAQMD GPLWIRSRAD SGKETLNLDE YSRTFPSSAG MKHTNWTTEA TRDTTMVIIN 360 SLALVETLMD ANRWAEMFPC LIARATTTDV ISSGMGGTRN GALQLMHAEL RVLSPLVPVR 420 TLKFLRFCKQ HADGLWAVVD VSIGEGSNSN SFSGCKRLPS GCVVQDMPNG FSKVTWVEHT 480 EYDETVIHQL YRQLISSGSG FGSQRWLATL QRQCDCLAIL MSSTIPTEDP AGISPSGRRS 540 MLKLSQRMVD NFCSGVCSST LHKWDKLVVG NISEDVKVMA RKSINDPGEP PGIVLSAATS 600 VWMPVTQQRL FAFLQDECLR SEWDILSNSR PMLEMLRISK SQGPDNRVSL LCANPMNANE 660 NTMFILQETW TDVSGSLVVF APVDTSSVNL VMRGGDSAYV SLLPSGFAIL PIDQSNYACT 720 NGEDASVKSS INSGHGGACL LTVAFQILVN SLPTAKLTVE SVETVNHLIS CTIQKIKTAL 780 QVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004140784.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A0A0L5U5 | 0.0 | A0A0A0L5U5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004157198.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.250870.1 |
Entrez Gene | 101218216 |
Publications ? help Back to Top | |||
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