PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.250310.1 | ||||||||
Common Name | Csa_2G297220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 247aa MW: 28422.8 Da PI: 9.8469 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.5e-32 | 169 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ Cucsa.250310.1 169 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHS 227 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-33 | 154 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-28 | 161 | 228 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.126 | 164 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-35 | 169 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 170 | 226 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGSKSQVMLN PQALLEDHQE VTPNSQMGFF NFPSNLTFFQ LPSIPQTHSP SPSFDPPNFS 60 TSNNNTNNNN NSNNLSETLL SSSILPLKSS ISYELAPQHL LSLQTSTPNL WPWGEIGERL 120 LMNGKRSNNN ENYNNQLGVS KMKMKKMKGR RKVREPRFSF KTMSDVDVLD DGYKWRKYGQ 180 KVVKNTQHPR SYYRCTQDHC RVKKRVERLA EDPRMVITTY EGRHVHSPSH DSEDSEAQTH 240 LNNFFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-26 | 161 | 226 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-26 | 161 | 226 | 9 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984038 | 0.0 | GU984038.1 Cucumis sativus WRKY protein (WRKY53) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004148455.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13 | ||||
TrEMBL | A0A0A0LJY4 | 0.0 | A0A0A0LJY4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004148455.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-54 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.250310.1 |
Entrez Gene | 101213135 |
Publications ? help Back to Top | |||
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