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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.247040.1 |
| Common Name | Csa_6G327430, LOC101205991 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
WRKY |
| Protein Properties |
Length: 327aa MW: 36456.6 Da PI: 6.6313 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.247040.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 107.6 | 6.3e-34 | 162 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+
Cucsa.247040.1 162 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQ 220
59********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MEEEKIKEEV LRNNRDQNSM GNPGLLFSDA IIPNNHTTNL FDFPLIDTID SSFKPSTFLD 60
LLATQDYTPS LFDLFSPPPP PPQPPLPLPS SAVAESSEVL NTPTTPNSSS VSCSSTERAF 120
DNDDVDRDKS PFNKQLKAKK KNQKKGREPR FAFMTKSEVD HLDDGYRWRK YGQKAVKNSP 180
YPRSYYRCTT AGCGVKKRVE RSSDDPSIVV TTYEGQHTHQ SPIMPRGALS STAFTPSPQQ 240
QPPLVFSQPQ QLYRNQFTYA PAPPADVVTC GGGFGHVFHS FGEERRLIDG RTTTTTSTTT 300
TDSFQDHGLL QDMIVPFPEE KEKKVN*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | LN683518 | 0.0 | LN683518.1 Cucumis melo genomic scaffold, unassembled_sequence31001. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Guo D,Qin G
EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
Plant Signal Behav, 2016. 11(3): p. e1150404
[PMID:26914912] - Prát T, et al.
WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
PLoS Genet., 2018. 14(1): p. e1007177
[PMID:29377885]
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