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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.244290.1 |
| Common Name | Csa_3G207390, LOC101222877 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
ERF |
| Protein Properties |
Length: 275aa MW: 30143.4 Da PI: 7.1141 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.244290.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 65.5 | 1e-20 | 142 | 190 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
y+GVr+++ +g+W+AeIr p + +r++lg+f taeeAa+a+++a+++++g
Cucsa.244290.1 142 YRGVRQRP-WGKWAAEIRNP-----KlaTRVWLGTFNTAEEAARAYDKAALEFRG 190
9*******.**********9.....557*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0001944 | Biological Process | vasculature development |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:0051301 | Biological Process | cell division |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MNSLKRSPSP SPSSQSPDSY HFSLPPPSIS SDQELSVIVT ALTSVVSGTS SHLHYSMADA 60
FWRQNQTPLP SFHSDSFSPS ATISSFTSST THPIFPPSVF ETCTVCQIQG CLGCNFFPPS 120
ASSSSQLSSE KKTANKRSKK TYRGVRQRPW GKWAAEIRNP KLATRVWLGT FNTAEEAARA 180
YDKAALEFRG PRAKLNFPFT DDSLRMMSSE REIQRTESEI SRNSSNSAGI GIGNEDEIWG 240
KIAKDEMDQW MSTLMTDHGG DSSDSASIGT WEFS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Matsuo M,Oelmüller R
REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
Plant Signal Behav, 2015. 10(11): p. e1051279
[PMID:26479402] - Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
J Vis Exp, 2018.
[PMID:26649488] - Bahieldin A, et al.
Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
BMC Plant Biol., 2016. 16(1): p. 216
[PMID:27716054] - Huang D,Lin W,Deng B,Ren Y,Miao Y
Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
Int J Mol Sci, 2018.
[PMID:29112140] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
Cell Rep, 2018. 22(5): p. 1350-1363
[PMID:29386120]
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