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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.242740.1 |
Common Name | Csa_3G808380, LOC101222865 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
C3H |
Protein Properties |
Length: 297aa MW: 31042.3 Da PI: 9.6358 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.242740.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 19.4 | 1.9e-06 | 102 | 124 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+ C+ + Ck+Gd+C+FaH
Cucsa.242740.1 102 SRMCNKYNSAEGCKFGDKCHFAH 124
567888888889*********** PP
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2 | zf-CCCH | 36.6 | 7.8e-12 | 263 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC++fa+ G C +G+rC+FaHg
Cucsa.242740.1 263 FKTKLCDNFAK-GSCTFGERCHFAHG 287
69*********.*************8 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SuperFamily | SSF90229 | 5.63E-6 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.389 | 34 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.5 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-8 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-12 | 98 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.436 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 99 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.64 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.99E-16 | 158 | 238 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-17 | 167 | 236 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.9E-12 | 167 | 237 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.739 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 7.2E-12 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.13E-15 | 170 | 233 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-15 | 260 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 262 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.164 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-7 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MDTRKRGRAE VGLKANGGLK KNKQDMEYLS TGVASKSKPC TKFYSTTGCP FGEACHFLHY 60 VPGGYNAVAQ MMNLPPAPPA PRNMGAPPPP MSNGSATQAV KSRMCNKYNS AEGCKFGDKC 120 HFAHAEWELG KPSAPSHDDP RSMGHIPNRL ASRMDAGPPG LAASFGASST AKISVDASLA 180 GAIIGKGGIN SKQICRRTGA KLSIRDHESD PNLRNIELEG SFDQIKEASA MVQELIVTVS 240 MAGPPKSATG ATGGTAGPAG NNFKTKLCDN FAKGSCTFGE RCHFAHGAAE LRKSGV*
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