PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 396aa MW: 44721 Da PI: 8.3921

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.238090.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	147.8	7.6e-46	120	271	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec......eaesss 79 +kkdrhski+T++g+RdRRvRls+++ ++fFdLqd+LG+dk+skt++WLl+++ +aikelt+ ssss+s++ e+ + Cucsa.238090.1 120 VKKDRHSKIYTAQGLRDRRVRLSIDISRKFFDLQDMLGYDKASKTLDWLLTKSRKAIKELTKKtqyhnnnnniitSSSSSSKFhfdhdfEECEVI 214 79***********************************************************66666666655422222222233333444444 PP TCP 80 ssasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmriknk 135 s+++ ++++++ +s++ +k+ + lakesrakarararert+ekm ++++ Cucsa.238090.1 215 SNDDDDEEAEKIIMLGkSSSNCKKNLGFHDVLAKESRAKARARARERTKEKMIMNQQ 271 4444444444444444366666666677788899*****************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-44	120	268	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.65	121	179	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.537	248	265	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH LVAPPPSPPP HHHHSEPVYI GPLQDPVLSG 60 VVAPIFLQVQ EEDRDQARMK NEQQEVAVLM SQNGNNNNNN NGQCFSSSTT LNNFTKKGSV 120 KKDRHSKIYT AQGLRDRRVR LSIDISRKFF DLQDMLGYDK ASKTLDWLLT KSRKAIKELT 180 KKTQYHNNNN NIITSSSSSS KFHFDHDFEE CEVISNDDDD EEAEKIIMLG KSSSNCKKNL 240 GFHDVLAKES RAKARARARE RTKEKMIMNQ QFRSPPPPPP QPSMPTPVVQ KAAGPDQENN 300 NIIGIMWKPS PMVTSSSSYQ KNLVISKGES CNYNNYCNNF YFPASNLTPN WDINIDSTFA 360 RPQSGFCSIA NMDSLPEFQV CAKPWDSCNN NQHLH*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MFSSTNNLHL FPLQQYFPSS SSSSPSYHHH LVAPPPSPPP HHHHSEPVYI GPLQDPVLSG  60
VVAPIFLQVQ EEDRDQARMK NEQQEVAVLM SQNGNNNNNN NGQCFSSSTT LNNFTKKGSV  120
KKDRHSKIYT AQGLRDRRVR LSIDISRKFF DLQDMLGYDK ASKTLDWLLT KSRKAIKELT  180
KKTQYHNNNN NIITSSSSSS KFHFDHDFEE CEVISNDDDD EEAEKIIMLG KSSSNCKKNL  240
GFHDVLAKES RAKARARARE RTKEKMIMNQ QFRSPPPPPP QPSMPTPVVQ KAAGPDQENN  300
NIIGIMWKPS PMVTSSSSYQ KNLVISKGES CNYNNYCNNF YFPASNLTPN WDINIDSTFA  360
RPQSGFCSIA NMDSLPEFQV CAKPWDSCNN NQHLH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-14	126	179	1	54	Putative transcription factor PCF6
5zkt_B	2e-14	126	179	1	54	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LC009303	0.0	LC009303.1 Cucumis melo CmTCP1 gene for TCP transcription factor, complete cds, cultivar: Fuyukei 1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011656282.1	0.0	PREDICTED: transcription factor DICHOTOMA-like
TrEMBL	A0A0A0KSL1	0.0	A0A0A0KSL1_CUCSA; Uncharacterized protein
STRING	XP_008459708.1	1e-177	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	5e-29	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.238090.1
Entrez Gene	105435716

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]