PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.237770.1 | ||||||||
Common Name | Csa_5G647290, LOC101219085 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Whirly | ||||||||
Protein Properties | Length: 242aa MW: 26742.6 Da PI: 10.0475 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 191 | 1.9e-59 | 65 | 200 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 vyk+kaal++++ +ptf++++sgn++++r+G+++l++a+a++erkydW +kq falsate+++l++l++++sceffhdp++ +s +G+vrk+l + Cucsa.237770.1 65 VYKGKAALSMEPCMPTFTKVESGNFIMDRRGSIMLTFAPAVGERKYDWTRKQLFALSATEIGSLISLGPRDSCEFFHDPGMLSSTAGQVRKSLAI 159 9********************************************************************************************** PP Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 + ++dG G+f++l+v n+ +++n+++svP + +ef+v++++ Cucsa.237770.1 160 KAHTDGNGYFFSLNVVNKPQNTNDYLSVPFTTGEFSVMKTA 200 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.2E-71 | 53 | 217 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 2.28E-61 | 57 | 240 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 9.9E-58 | 65 | 199 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MMKLTRLFSR NQLFEQIVWK KAGYVGHPLG SHPFSSNAGI SDSTQNFTRT VTKNAGGRVF 60 ASYHVYKGKA ALSMEPCMPT FTKVESGNFI MDRRGSIMLT FAPAVGERKY DWTRKQLFAL 120 SATEIGSLIS LGPRDSCEFF HDPGMLSSTA GQVRKSLAIK AHTDGNGYFF SLNVVNKPQN 180 TNDYLSVPFT TGEFSVMKTA CSFALPSLLG WDRVTNPNLG VGSVFQPKKI DREALSLEWE 240 R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 2e-77 | 57 | 216 | 9 | 168 | StWhy2 |
3n1i_A | 2e-77 | 57 | 216 | 9 | 168 | protein StWhy2 |
3n1j_A | 2e-77 | 57 | 216 | 9 | 168 | Protein StWhy2 |
3n1k_A | 2e-77 | 57 | 216 | 9 | 168 | protein StWhy2 |
3n1l_A | 2e-77 | 57 | 216 | 9 | 168 | protein StWhy2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681889 | 8e-40 | LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051. | |||
GenBank | LN713263 | 8e-40 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141520.1 | 0.0 | PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 9e-83 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A0A0KXS2 | 0.0 | A0A0A0KXS2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141520.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 1e-77 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.237770.1 |
Entrez Gene | 101219085 |
Publications ? help Back to Top | |||
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