PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 252aa MW: 27575.4 Da PI: 5.1417

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.235510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.1	1.9e-17	55	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Cucsa.235510.1 55 PVFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 105 579**998.******843...6********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.3E-12	55	105	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.655	56	113	IPR001471	AP2/ERF domain
SMART	SM00380	1.0E-35	56	119	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.15E-21	56	114	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.7E-31	56	114	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.5E-10	57	68	IPR001471	AP2/ERF domain
CDD	cd00018	1.29E-30	57	115	No hit	No description
PRINTS	PR00367	9.5E-10	79	95	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MENDSTILNS SPPPSPSSSG SLSPPSSSSA VVESNRKRLK RPRENNNNNN NSKHPVFRGV 60 RMRAWGKWVS EIREPRKKSR IWLGTFSTPE MAARAHDVAA LTIKGTSAIL NFPELAHQFP 120 RPASTSPRDV QAAAAKAASM EIPTPPLSSS SSSTSTSSSS SSSSSSSLCP SSPEELTEIV 180 ELPSLGTSYE TAELGNEFVF VDSVEGWLYS YPWYNRVSNA EQVEELQEDY GLFFKDQILM 240 ADYTDTFLWQ N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-18	51	114	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681811	0.0	LN681811.1 Cucumis melo genomic scaffold, anchoredscaffold00069.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008462760.1	1e-129	PREDICTED: ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	2e-66	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1S3CI75	1e-128	A0A1S3CI75_CUCME; ethylene-responsive transcription factor TINY-like
STRING	XP_008462760.1	1e-129	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-65	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.235510.1
Entrez Gene	101219745

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]