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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.232520.1 |
Common Name | Csa_2G360730, LOC101222600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
B3 |
Protein Properties |
Length: 396aa MW: 44846.6 Da PI: 8.1203 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.232520.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 63.9 | 2.5e-20 | 34 | 113 | 13 | 98 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++lv+p+kf ++ ++ + t+tl+ +sg +W+v l + ++++ ++++GW+eFvka+ L+++D +vF+++g s+f v +f+
Cucsa.232520.1 34 EQQLVIPNKFSNNLR--NKLPDTVTLKGPSGATWDVGL--TSSDDKLYFKRGWQEFVKAHSLEQNDLLVFRYNGMSQF--DVLIFD 113
578*******84444..45889****************..********************************998888..777765 PP
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2 | B3 | 43.8 | 4.7e-14 | 274 | 367 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.... CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef..el 92
f+ v+ ps+v ++ l +p + ++++ + ++++++l+ + +W k++++ +++ lt+GWk+F +n+L+e D++vF+ +++s++ l
Cucsa.232520.1 274 FKVVMRPSHVYRRFFLFIPTQWVTKNlS-L--RNQDIILRV-GSDEWPTKFNFTPSRQCGGLTSGWKHFSVDNNLEEFDVCVFEPVNKSSGpvVL 364
778999********************53.3..344677766.6688999998877777777***********************77554440044 PP
EEE CS
B3 93 vvk 95
vk
Cucsa.232520.1 365 EVK 367
455 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MDKVGDSSNK WAEDIYWSHF QFTHFYQILA GGCEQQLVIP NKFSNNLRNK LPDTVTLKGP 60 SGATWDVGLT SSDDKLYFKR GWQEFVKAHS LEQNDLLVFR YNGMSQFDVL IFDWKSFCEK 120 EASYFVKICE NKKIDSGGQA KRKFREPSLD GFDANINNGA ECDSSENIIH DDSMERMIQD 180 VVSKATNFNG QPEVFSAEPI RTVQTRRKKK TPNKTAIIST PDPVQLSDSD VEATPIKKIG 240 SYVEQYVSHR RAITEGEKNN ALKLAEAASS DTGFKVVMRP SHVYRRFFLF IPTQWVTKNL 300 SLRNQDIILR VGSDEWPTKF NFTPSRQCGG LTSGWKHFSV DNNLEEFDVC VFEPVNKSSG 360 PVVLEVKIFR VVEDVIPLTR VASKGNRKPT KAPEA*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 8e-15 | 242 | 375 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 8e-15 | 242 | 375 | 16 | 146 | B3 domain-containing transcription factor VRN1 |
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