PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 213aa MW: 23289.7 Da PI: 5.9726

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.231820.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.6	3.1e-18	34	83	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t +Aa a+++a+++l+g Cucsa.231820.1 34 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDNAARRLYG 83 69**999.******8...3.35**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.20E-30	33	91	No hit	No description
SuperFamily	SSF54171	7.85E-21	34	91	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.023	34	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.8E-30	34	91	IPR001471	AP2/ERF domain
Pfam	PF00847	6.9E-13	34	83	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-35	34	97	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	35	46	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	57	73	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MLKSCSSNNK NNKKASSRKG CMRGKGGPEN ALCTYKGVRQ RTWGKWVAEI REPNRGARLW 60 LGTFDTSHDA ALAYDNAARR LYGSDAKLNL PLISSSISVS VSSSSSTTTS DNNNNNSVVA 120 TANTYNNDVN PTVEDVASSS SLSNNKRFRE DEDQEQIGGL WRAMSISLDD SIWVEAAMSL 180 DFPLLMEQQT FFSPNLVDTN PNAGLDSSLQ WY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	8e-21	35	92	3	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269\|PubMed:11798174}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00240	DAP	Transfer from AT1G75490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress. {ECO:0000269\|PubMed:11798174}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649643.1	1e-155	PREDICTED: dehydration-responsive element-binding protein 2D
Swissprot	Q9LQZ2	5e-52	DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBL	A0A0A0LL46	1e-154	A0A0A0LL46_CUCSA; Uncharacterized protein
STRING	XP_008444762.1	1e-114	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2562	33	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75490.1	4e-44	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.231820.1
Entrez Gene	101213875

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]