PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.219890.1 | ||||||||
Common Name | Csa_7G073700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28456.9 Da PI: 8.6311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp +r +r++lg+f tae+Aa+a+++a+ k++g Cucsa.219890.1 116 NYRGVRQRP-WGKWAAEIRDP----IRaARVWLGTFNTAEDAARAYDEAAIKFRG 165 59*******.**********7....358*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-35 | 115 | 173 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-23 | 116 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-33 | 116 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-40 | 116 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.093 | 116 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 116 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLMASDHPPF SPAFRRITEE QELSVIVDAL TQVVSGAPSS ALSFHHDHFL RVLFPPINPT 60 PPFSSSSEFD TCPLCKINGC LGCHFFSAPA STTTTTANAA NKNNNSGRRV KRLKKNYRGV 120 RQRPWGKWAA EIRDPIRAAR VWLGTFNTAE DAARAYDEAA IKFRGPRAKL NFPFPDYSLS 180 STFHSSPPPA STTTSASASF TPAAPPPPPL LPTSTTTSSS MKIEITQNNI PFPEFFINDE 240 DGDVQRYLFD YDNQSRSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 115 | 174 | 4 | 64 | ATERF1 |
3gcc_A | 2e-24 | 115 | 174 | 4 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137113.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 4e-36 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0A0K4S2 | 0.0 | A0A0A0K4S2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137113.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-32 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.219890.1 |